Array 1 378635-377328 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQX01000002.1 Enterocloster bolteae strain TF09-4AC TF09-4AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 378634 33 100.0 34 ................................. TATTAATGTCTTTTTATTTTCAGTCATGTAACAC 378567 33 100.0 34 ................................. CGGAGCATGGCCTGGACCGGAAACTGACGCGCTA 378500 33 100.0 35 ................................. ACGGAGCTGGCCGGCCTGACGGCCAAGGCCACCAA 378432 33 100.0 34 ................................. CCCGGTGTGGGATATCTGGTATCCGCCCAACGGA 378365 33 100.0 34 ................................. ATTTTGTTATTGAAAAATTTCCGTGTTTGATATA 378298 33 100.0 33 ................................. TCCCATTCATTGAGTTCCGGGTCAGACATATCA 378232 33 100.0 34 ................................. TTTGACAGCCTGTGTGTACGATACAGCCCCAGAA 378165 33 100.0 33 ................................. TATCATCAATAACCTGAAACTTTTTTGGAACGC 378099 33 100.0 34 ................................. GCTTGTGGGGCCAGAAATAGGAAGAATAATTGCA 378032 33 100.0 34 ................................. AGCCTGGCCATGGAGAACCCGTACAGGAATTAGG 377965 33 100.0 35 ................................. AAAACTACAGCGGCTCCCCCCAAACCATTAATGTA 377897 33 100.0 34 ................................. GGACAAGAACAAGGATGATGACGAAGAGATGACC 377830 33 100.0 35 ................................. CGAGGTTTTGGAGGATTTACGGAATGTGATTTATC 377762 33 100.0 33 ................................. AGAATTATGAAAGGAGTGTATAATGGATTTAAA 377696 33 100.0 33 ................................. TTTATCTGTCATGGATATACCGGAATATAACCA 377630 33 100.0 34 ................................. ATAATCCTTTTGTGTATTGTAACTGAGATTGGTT 377563 33 100.0 34 ................................. ATGTAATCAGTAAAGATGGGGATGAAATGCGAAT 377496 33 100.0 34 ................................. ATTAAATGAAGCGCGGCAAATATCTGAATATTTC 377429 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 377360 33 84.8 0 .........................C..TTCC. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.2 34 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGTTTTCAAATAGTTTGGTGCGAACCTGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAAAACGGCTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGGGGGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : TTCTGGTCAGTCTCTGCCCTCACAGCGAAGCAAGCTGAGAATCCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTATTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACCTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGTCTGATTGTCTTTAAATGCAGTTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 181910-180336 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQX01000001.1 Enterocloster bolteae strain TF09-4AC TF09-4AC.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 181909 33 100.0 33 ................................. AACTTCGGCGTCCAGGCTCATGTACCATATTTC 181843 33 100.0 34 ................................. AACATTGGAGGCGCGATTGTCTCCACGGTATCCA 181776 33 100.0 34 ................................. AGCCTGGCCATGGAGAACCCGTACAGGAATTAGG 181709 33 100.0 34 ................................. TATGTACCAGATTCCCTGGGAACCATTTTCCTGA 181642 33 100.0 33 ................................. CTCATCAACTAAAATGCTATCCTTGAAGGTACA 181576 33 100.0 34 ................................. TGTTATATTGTCTATTTGCCCCTGTGTCTTATCG 181509 33 100.0 33 ................................. CCTGAGAGATGGATTAAACAGAAAGACAGTGAA 181443 33 100.0 35 ................................. TTGCAACAGGATGCCGTGTCAGCGAGGTGGTGGGT 181375 33 100.0 33 ................................. CGGTAGTTGATGTTGAACTAATTAATAAATCAT 181309 33 100.0 34 ................................. TTTGGCTGCATCTTTTGTTTCATCTTTGGTTTTG 181242 33 100.0 35 ................................. ATTTATGGCAGTGTCAACTATGGCCTCTGCATCTC 181174 33 100.0 35 ................................. TTTTAAGGACATGTACTATAGGAGGGAGGTCAAAT 181106 33 100.0 34 ................................. ATCCTCTCTCGTGGGGCGGTAGACAGAATAATCC 181039 33 100.0 33 ................................. ATGAAGCGATAAACGGTTGTGCACCTCTGCTGA 180973 33 100.0 34 ................................. CATCGGACTGGACATGCATTATATCAAGCTGGGC 180906 33 100.0 33 ................................. TTAAGGAAGTCAGGGACATGTGTTAATCATAGG 180840 33 100.0 35 ................................. TTCTTCCCGCGTGGGGCGGTAAACAGAATAATCCA 180772 33 100.0 35 ................................. ACAGGAGATTATTACAAAAAGGAGTAGGCTTATGT 180704 33 100.0 34 ................................. CCATCCTGGCAATTGCATATCTTTACTGGGTATA 180637 33 100.0 33 ................................. TTCACGGGTTGCATATATACCATCAAGCCCATG 180571 33 100.0 34 ................................. GTCATTAAGATAATAGTGACCTAATGTTTCAGGT 180504 33 100.0 36 ................................. CAAGATATCTATTATGCATTTAGCAGGATAGATAAA 180435 33 100.0 34 ................................. AATGAAATGATGTCGCTTGTATCAACATCATATA 180368 33 78.8 0 ...C..................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 99.1 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAGGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : ATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGGTCAACAGGGAATCCGTTAAGCGCATACCCCCCTCTGCAAATAACATCCGCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //