Array 1 24572-24406 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFJ01000027.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 24571 26 100.0 48 .......................... CGAGATTCTAGATTCCCACTTCCGTGGGAATGACGATTCAGTTTCGTT 24497 26 96.2 40 ............T............. GTCATTTCCGACAACGCCGCAATCTTGAAATTCGTCATTC 24431 26 96.2 0 ..................C....... | ========== ====== ====== ====== ========================== ================================================ ================== 3 26 97.5 44 CCGACAACACCGCAATCTTGAAACCC # Left flank : CGCGGCGGGAATCTATCGGAAATGACTGAATCCCCGAGATTCTAGATTCCCACTTCCGTGGGAATGACGGTTCAGTTGCGT # Right flank : GTCATTCCCGCGCAGGCGGGAATCCAGACCCCTGACGCGGCGGGAATCTATCGGAAATGACTGAAACCCCGAGATTCTAGATTCCCACTTCCGTGGGAATGACGGTTCAGTTGCGTAGGACTGGGTCGTCGAAAGGGGCGGATTCGATGGATTCGATGAAAACGGTAGAAATGTGGGATTGATGGAAATGGCAGGCTGAAGCCCATCCTACAGCCCGCTGATTCCCCGGCACCGATGCCGTCTGAACCTTCAGACGGCATCCAAAACCCGGTATTTCAAGGCGGGCAGGCGGTTGCGGACGCTGTTCAGGCGGTTGGCATCGATGTCTGCCGTAACGATGCCTTCGCCTTCGGGTAATACGTCCAATACGTCGCCCCACGGATCGACAATCATGCTGTGTCCGAACGTGCGCCGTCCGTTTTCGTGCAAACCGCCCTGTGCCGCCGCCACGACGTAACATTGGTTTTCGACGGCACGCGCGCGCAGCAGCAGCTCCCAAT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACAACACCGCAATCTTGAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 21238-21479 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFJ01000034.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 21238 34 100.0 34 .................................. GGGATAACGGCAATATTCAAAGTTTATAAAAGAC 21306 34 91.2 38 ..........................T...A.G. AAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 21378 34 97.1 33 ..........................T....... GGGATAACAGCAATATTCAAAGGTTATAAAAGA 21445 34 100.0 0 .................................. | T [21447] ========== ====== ====== ====== ================================== ====================================== ================== 4 34 97.1 35 CCGTCATTCCCGCGCAGGCGGGAATCCAGACCTT # Left flank : AGCTTCAGGCATGGGGCGAACGCAACAACGTTACCGTGATTTCGCAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATCGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCGCACGAAATCATCGTCGTGCTTGATGCCAACATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTAGGGCTGACCGGTTTAATCGTGACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGAGCCGAAATGCCGTCCGAAAACAGCAGACCGATG # Right flank : AGAACAACAGCAATATTCAAAGATTATCTGAAAGTCCGAGATTCTGGATTCCCACTTTCGTGGGAATGACGGGATTTTAGGTTTCTGATTTTGGTTTTCTGTTTTTGTAGGAATGATGAAATTTTGAGTTTTAGGAATTTATCGGAAAAAACAGAAACCGCTCCGCCGTCATTCCCGCG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCCAGACCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 44560-43258 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFJ01000004.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 44559 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 44493 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 44427 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 44361 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 44295 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 44229 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 44163 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 44085 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 44019 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 43953 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 43887 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 43821 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 43755 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 43689 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 43623 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 43557 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 43491 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 43425 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 43359 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 43293 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //