Array 1 166138-165192 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSUK01000029.1 Salmonella enterica subsp. enterica serovar Typhi strain PHL8802 PHL8802_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166137 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166076 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166015 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 165954 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 165893 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 165831 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 165770 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165709 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165648 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165587 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165526 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165465 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165404 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165343 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165282 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165221 29 96.6 0 A............................ | A [165194] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184311-182269 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSUK01000029.1 Salmonella enterica subsp. enterica serovar Typhi strain PHL8802 PHL8802_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184310 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184249 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184188 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184127 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184066 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184005 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183944 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183883 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183822 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183761 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183700 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183639 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183578 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183517 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183456 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183395 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183334 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183273 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183212 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183151 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183090 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183029 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182968 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182907 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182846 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182784 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182723 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182662 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182601 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182540 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182479 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182418 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182357 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182296 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGATTATGTTGGTAGAGTTTGTTGTTGACAAAAAGTAGTTGTTTATAACCATTATATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //