Array 1 433412-434537 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMY01000062.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 24390 SEEH4390_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433412 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433473 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433534 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433595 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433656 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433717 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433778 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433839 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433900 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433961 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434022 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434083 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434144 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434205 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434266 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434327 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434388 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434449 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434510 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450794-452457 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMY01000062.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 24390 SEEH4390_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450794 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450855 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450916 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450977 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451044 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451105 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451166 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451227 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451288 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451349 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451410 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451471 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451532 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451593 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451654 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451715 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451776 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451837 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451898 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 452001 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452062 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452123 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452184 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452245 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452306 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452367 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452428 29 96.6 0 A............................ | A [452454] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //