Array 1 259506-262594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015560.1 Pasteurella multocida strain USDA-ARS-USMARC-60717 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 259506 28 100.0 32 ............................ AGTCAACTCAAAGTCAACTAATAGTCATCGTT 259566 28 100.0 32 ............................ TGTTGTTTGTTGTGTTGATACGTAGTGTTAAC 259626 28 100.0 32 ............................ TCACAGAATCTATATCGCAGTGCAGTCAAGAT 259686 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 259746 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 259806 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 259866 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 259926 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 259986 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 260046 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 260106 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 260166 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 260226 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 260286 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 260346 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 260406 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 260466 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 260526 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 260586 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 260646 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 260706 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 260766 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 260827 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 260887 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 260947 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 261007 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 261067 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 261127 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 261187 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 261247 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 261307 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 261367 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 261428 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 261488 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 261548 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 261608 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 261668 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 261728 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 261788 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 261848 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 261908 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 261968 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 262028 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 262088 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 262148 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 262208 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 262268 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 262328 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 262388 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 262448 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 262508 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 262568 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1488196-1487208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015560.1 Pasteurella multocida strain USDA-ARS-USMARC-60717 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1488195 28 100.0 32 ............................ CGTCGATTCGATAGGTCGCCACCGTACTGATA 1488135 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 1488075 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 1488015 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1487955 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1487895 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1487835 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1487775 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1487715 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1487655 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1487595 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1487535 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1487475 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1487415 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1487355 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1487295 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1487235 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //