Array 1 61569-62696 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKYK01000011.1 Corynebacterium diphtheriae strain rz373 contig000011, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     61569	    29	  96.6	    32	............................C	AATGCCGTCGAGCATTGATTTAAAGCCGGCAG 	
     61630	    29	 100.0	    32	.............................	GATCCTGCTATGCGCTCTGCCGCCGCGAAGCT 	
     61691	    29	  93.1	    32	..........................TG.	TTTTATTCTAGGCGGTTAGGGATTCAAGGGCT 	
     61752	    29	  96.6	    32	............................C	CATTGCTTATTTTCTATCCACTTGCCGTCTCC 	
     61813	    29	 100.0	    32	.............................	CACTTCACGGTACGGGGCCGTAACGGTGCCGA 	
     61874	    29	  96.6	    32	............................C	TTGGGCTCAATGCAATGCAATCACTCCAGCAG 	
     61935	    29	 100.0	    32	.............................	TTTTTGACGCGATGACCAACACATACGCGGAC 	
     61996	    29	 100.0	    32	.............................	CACGTGATCGCTGGCTCGAAATGGTGCAAGCC 	
     62057	    29	  96.6	    32	............................C	AACACTAGGAACGGAGGCATACGAGATGAGAG 	
     62118	    29	  96.6	    32	............................C	AACACTAGGAACGGAGGCATACGAGATGAGAG 	
     62179	    29	 100.0	    33	.............................	GCAGCGGCCAGTGGGAGAAGCTGAACCCTAGTA	
     62241	    29	  93.1	    32	........T...................T	TGACACGCATGGATTATCTTCGCAGTAGACAC 	
     62302	    29	 100.0	    32	.............................	TCCTCGAGTGTCTCCAGCTTTTTCCCGATCTT 	
     62363	    29	  96.6	    32	............................C	CTGTCTACCGTTGTTGGCTCACCCATAACTAG 	
     62424	    29	  96.6	    32	............................T	CATCCGTAAAACTTTCTACTCGGTGAAACGTC 	
     62485	    29	  96.6	    32	............................C	CTGTCTACCGTTGTTGGCTCACCCATAACTAG 	
     62546	    29	 100.0	    32	.............................	AAAACCAATACTCCTACAGCTGGAACGACCAA 	
     62607	    29	  96.6	    32	.............T...............	TCATAATCAGCACTGTCAATCCTCATGTATTG 	
     62668	    29	  89.7	     0	...........GT...............C	|                                	
==========	======	======	======	=============================	=================================	==================
        19	    29	  97.1	    32	GTTTTCCCCGCACCAGCGGGGATGAGCCG	                                 	       

# Left flank :   CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA
# Right flank :  CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAAATTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCTTATATTCAGGGGGAGTCCTCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG

# Questionable array : NO	 Score: 5.66
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGCACCAGCGGGGATGAGCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.70,-12.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [2-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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