Array 1 16228-15224 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIY01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N46853 N46853_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16227 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16166 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16105 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16044 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 15983 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15922 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15861 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15800 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15739 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15678 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15617 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15556 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15495 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15434 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15373 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15312 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15251 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11561-9897 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIY01000053.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N46853 N46853_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 11560 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 11499 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 11438 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 11377 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 11310 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 11249 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 11188 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 11127 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 11066 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 11005 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 10944 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 10883 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 10822 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 10761 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 10700 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 10639 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 10578 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10517 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10456 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10353 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10292 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10231 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10170 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10109 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10048 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 9987 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9926 29 96.6 0 A............................ | A [9899] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //