Array 1 5441032-5437498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017316.1 Streptomyces rubrolavendulae strain MJM4426 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5441031 29 100.0 32 ............................. GCGGCGGCGCGCTTGGAAACAGTGTCGACCTG 5440970 29 100.0 32 ............................. GAGCCGTTCCGATCGAGGATCACCACGTAGTC 5440909 29 100.0 32 ............................. GTCAAGGCATCCTCCATCGCCGCGAGGTGCCC 5440848 29 100.0 32 ............................. GTCTCGGTCATCTCGGGTCAGCTCCTGGTCAG 5440787 29 100.0 32 ............................. CGGCGCCGGTCGGCGGCCGCGGCGTCCTGCCG 5440726 29 100.0 32 ............................. GCGCTGGGCAGGCTCGCGGAGGAGGGGCTCGT 5440665 29 100.0 32 ............................. CGGGCAACCCTCGTGGTCGTCCCGCAGGACAT 5440604 29 100.0 32 ............................. TCAGCCGTCCCGTCCTGATTGATCGTCCACCC 5440543 29 100.0 32 ............................. GTCTCATCGCGAGTTCTGGCCTTGCGCAGCGC 5440482 29 100.0 32 ............................. GAGCACGACTCCGCCTGGCACGCCATCGAGGG 5440421 29 100.0 32 ............................. CGGGCGCAGTGGGGGGAGACGCAGTACGGCAT 5440360 29 100.0 32 ............................. GTCGGCGGGGAGGGTGGCGACGGCAGCGGGGT 5440299 29 100.0 32 ............................. GATCCGGCAGCGCATCATCCACAGCGACGGCA 5440238 29 96.6 32 ............................T AATCTCGTGACTAGAGAGGAGGGACGGATGCC 5440177 29 100.0 32 ............................. TTCAGGTGGCAACCGGGCGAGGCAAGAGCCAG 5440116 29 100.0 32 ............................. GTCACCTGTCTCGTCCGGTGCAATGGACGCGA 5440055 29 96.6 32 ............................T TGAAGTGGCTGTGTCTGCCCCAGGACTGCAGG 5439994 29 100.0 32 ............................. TGCAACTGCACTCTCGACTATGCGAAGGAGGG 5439933 29 100.0 32 ............................. GGCCTGCGCGCGCTCCTGCGCGAGATGGGGTT 5439872 29 100.0 32 ............................. GGCCCCGGCCCCGGCCGCCGCCGGGGGTTCTC 5439811 29 100.0 32 ............................. GACTAGGTGACAGAGAGGGCCCGGTAGACCCG 5439750 29 100.0 32 ............................. TTGTCCTACTCCGCCCAGGTCGACGCGTCCGG 5439689 29 100.0 32 ............................. GGGCGTGAGCGTGCCGTCCGGGCCCATCCTCC 5439628 29 100.0 32 ............................. GCGTACACCCCCGGCGAGGACTCGGTGGCCGA 5439567 29 100.0 32 ............................. CGGACCTACCGGCCGGACTGGTACGACGTCAT 5439506 29 100.0 32 ............................. GTGTTGATCGGCCGCGAGATCAAGACCGGCAG 5439445 29 96.6 32 ............T................ GAAGTCTCCGACGGCGTTCGCCTTGTCCTTGA 5439384 29 100.0 32 ............................. GAGCAGGGCGTTCCTGCGGTGATCACTGACGT 5439323 29 100.0 32 ............................. CGTGCCGCACCACCGCCCGCCCGGCCGCCCGC 5439262 29 100.0 32 ............................. TGGATGTCGCCTCGCTCGATCGACTCGGCGAG 5439201 29 100.0 32 ............................. GCCTGATACTCCGTGCCAGACGTGATCTGGTA 5439140 29 100.0 29 ............................. AGCTCCTGGCGGAACTGCTGGATACGCGC 5439082 29 89.7 32 CGC.......................... ATGTGGCGGGCCGCGCATACGGAGTCGGAGCG 5439021 29 100.0 32 ............................. GGAACGTTGTAAAGGTCGATCCGGATGCGCCG 5438960 29 96.6 32 ............................A CCACGGCATGATCCCGGCCGGTCAGATGGGCA 5438899 29 96.6 32 ............................G TGTCGGGGTCGACGCGCAGGACTTTGCGGACG 5438838 29 100.0 32 ............................. GGTCGGGACTCCTACGACCTCGACCCGGTCCT 5438777 29 96.6 32 ............................T CGGGCGGGGACCCGGACCCGGATCTCATCGAG 5438716 29 100.0 32 ............................. GGTTGTGGCGGCCACCCCACCTCACCAGCGGT 5438655 29 100.0 32 ............................. CTGCGCCGCATCCGCTCCCGCGGAATCGAGCA 5438594 29 100.0 32 ............................. GCGTCGCTGAGCTCCTGGCTCAGGACCCCGGG 5438533 29 100.0 32 ............................. GACGTCGATGACGTGGTGGCGGTGGGGGTTGG 5438472 29 100.0 32 ............................. CGTGGCCCTTCACCCAGCCGAACGGCCACTTG 5438411 28 96.6 39 .................-........... GTCCCCGCCCCTCGCGTGGCACCGGCGCTTTCCGCGGAT 5438344 29 100.0 32 ............................. CAGCCGGGCGAGGTCGTCGTGGGGCTCAACTC 5438283 29 100.0 32 ............................. GGCGCGCGCCGCTGCTGCTGGGAGCGGGCGCG 5438222 29 100.0 32 ............................. GGTCGACGGCCGGTCGACGGTGCGTCGGGGCG 5438161 29 100.0 31 ............................. GCGGGCCGTCGGTGTAGACGGCCGGGCCCAT T [5438134] 5438100 29 100.0 32 ............................. GGTCGACGGCCGGTCGACGGTGCGTCGGGGCG 5438039 29 100.0 32 ............................. CGCGGGCCGTCGGTGTAGACGGCCGGGCCCAT 5437978 29 100.0 0 ............................. - Deletion [5437950] 5437949 21 72.4 32 --------..................... GGTCGACGGCCGGTCGACGGTGCGTCGGGGCG 5437896 29 96.6 31 ............................G CGGCGGCGGTGCCGAGGCCCTGCTCGATGGA 5437836 29 100.0 32 ............................. TTGGCGGTACGAAGCGCTCCATCGTGAACGTG 5437775 29 100.0 32 ............................. TGACCGACCTGTGAAAAGCGCGGGGGGTGGTT 5437714 29 96.6 32 .........................C... GCGTCTGCCGCTGCCCTGTTCCGGGCCGTGTC 5437653 29 93.1 32 ..............A.G............ GCCATGTGCGCGAGGACGGCGGCCCCCAGCAG GG [5437630] 5437590 29 100.0 32 ............................. GGTTCCGCGCCGAGCTTGAGCTGTGCGACCGG 5437529 29 93.1 0 ......................G.....T | TA,C [5437502,5437505] ========== ====== ====== ====== ============================= ======================================= ================== 59 29 98.6 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CCAGTCCGACGGAGGCCGGGTCCTGGACGGCGGACGCAACTACGGGGACGAGCCCATCTGGTGACCGTCATCGTCCTCACGAACTGCCCTGCGGGCTTGCGCGGTTTCCTCACACGCTGGCTCCTGGAGATCTCTCCTGGTGTCTTCCTGGGCTCACCGTCTGCTCGCGTCCGCGACGTCCTGTGGGACGAGGTCCGCAAGTACTCCGGTCAGGGCCGGGCCTTGCTCGCGTACCACACCGACAATGAACAGGGGTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCATCGACCATGAGGGCCTCACCCTCCTGCACCGCCCCGCTGCTCCCACCCGAACCAGCCCGGCGGCCGAACCACCACGACAGGGCTGGAGCAAGGCCGCGAAGCGGCGGAGATTCGGGAGGTGAATGTGTCCGCTATGAGCGTTTGGTCGACTTCTCAAGAAGTGAGCGAAAACCGCCTGCGCAGCCGGTAAACCCGCAGGTGAACTCCT # Right flank : GGGGCGCTGACGGGTGCACGCCGCTGGCTCACCTGCGGGTGAGCCGGGCGTGCGGATCGCGTTTGCGGTCTACCGCGGGGCGATCTCCTCGATCAGGCCCTCGACGAGCTTCCTGATCTCGTCGCGGATGGGGCGGACGGCCTCGACGCCCTGGCCGGCCGGGTCGTCGAGCTTCCAGTCCAGGTAGCGCTTGCCCGGGAAGACGGGGCAGGTGTCGCCGCAGCCCATGGTGATGCAGACGTCGGACTCCTTGACGGCGTCGACCGTCAGGATCTTCGGCGTCTCGGCGGAGATGTCGATGCCGACCTCGCGCATCGCCTCCACGGCGGCCGGGTTGACCTGGTCGGCGGGGGCCGAGCCCGCGGAGCGGACCTCGACGCGGTCCCCGGCCAGGTGCGACAGCCACGCCGCGGCCATCTGGGAGCGGCCGGCGTTGTGGACGCAGACGAACAGGACTGAGGGCTTCTCGGACACGGCGGGTCTCTCTCACGACGGGGTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5452547-5451235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017316.1 Streptomyces rubrolavendulae strain MJM4426 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5452546 29 100.0 32 ............................. GCGCGCGTCCGGCCGACGCGTGGCGGTCGTCA 5452485 29 96.6 31 ............................T GGGCGGACGGCGGCAAGGTCGCGGCACGTGG 5452425 29 100.0 32 ............................. CACCCCGTACGCGACGCGCATCCAGAACGCGG 5452364 29 100.0 32 ............................. CCTGCGCCCCCACGTCGCGAATCCGCCGGGAT 5452303 29 96.6 32 ............................T CGGCTTGGTGAGCCCGCCATTCGGGAGTTCAT 5452242 29 100.0 32 ............................. TTCTCGCCCGCCCACATGTCCTCAGTCGTCGT 5452181 29 100.0 32 ............................. GGCTTGTCGTCCGGCCGTCGGGTGGTCTTCGT 5452120 29 100.0 32 ............................. TGGTGCCGCAGCGTGTGGGGCTTGATGGTGGC 5452059 29 100.0 32 ............................. TCCCTCCAGAACCAGCTCGAAGACCTACAGCG 5451998 29 100.0 32 ............................. CTGTTCAGCCTGCCGGTGCAGGGCAGTGCGCA 5451937 29 96.6 32 ..........T.................. GTCAAGTCCGGGCCGATGGCGGACGCTTCCAC 5451876 29 96.6 33 ..............G.............. CGGGCCGCCCAGGCGGTGAGGCGGTCCCAGCGG 5451814 29 96.6 32 ..............C.............. GAGCAGCGGCGGCCGGTGGACGGGCCCTCGCC 5451753 29 96.6 32 ..............C.............. TCCTCGCCGGCGGCGCAGCCGCTGCAGAGGGC 5451692 29 93.1 32 ...G..........C.............. CGTGACGTGCACGGCGTCGACACGCGGCGTCA 5451631 29 93.1 32 ...G..........C.............. GTCGTACGCCTCTTCAAGGACCCGCCCCCCGA 5451570 29 93.1 32 ...G..........C.............. AGCGGCCAGGGCGTCGGTACATGGCTCTACCG 5451509 29 93.1 32 ...G..........C.............. CACGTGGTGCTCGAAGCGCTGCACTCCTGGCG 5451448 29 100.0 32 ............................. ATGAGTGGGGCCCCGGATGATGAGATCCGGGG 5451387 29 100.0 32 ............................. GCGACCACGTCCGTGGCCGACATTCGATCGCT 5451326 29 89.7 32 ...A................A...A.... GTCACCGACATCACCCCGCCCGCGCTGGAGCG 5451265 29 82.8 0 C..G.................C..C...G | AC [5451240] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.6 32 GTGCTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGGCCCGACCCGCTGGCGCGCCGCCGAGATGATGTGCCCGCCCGCCCTGCGCCCGGCCGTGGTCGTCCTCCTGGCCATGATGGCCGCCGAGGGCACGTCCGTGCTGCGCAACGTGTACGTCATCAACCGCGGCTACGAGGACCTCGCGGAGCGCCTGAACTCGGTCGGCGCCCAGATCGAGATCTTCCGGGACATCTGACCCGTGATTGCCGCCGCCCCGCCCGCCTCTTCGGGGCGGGGCGCGACGGCCGCCCCCTCACACGCCAAAGACCGGCACCGCACGCCCACGTGCCGCTCAGGGCGCCTTGCCACGTCGAGCACACGGACAGTCCTGACCTCCGACAGCACCGGTCTCTCGCACAGGAGAAAGGGGTGGAGCGATGACAAGCACGAAGACGGAGAGCGAACGCACCATTGCGCACCCTGTGGGCGTTTCACCCGCTTCACGGGAAGCGACCGAGAACCGGCGAAGCCGCAAGTAAAACCCCAGCTCAAGCCCT # Right flank : GCATGGCCCTCAGAGATGAGGCTACCGAGTGCATCAGGTCTACATGGCAGGCCGTCAACTAGAGCCGATCAAGTTCTCAGAAAGCTCCACGCGCGGTCCCGCGAGGATCCTAGGCTCTCTTCTGGCGATAGGTCGGCCGACCCCTTGGGAACGTGAGGGCCGGACTCGCTGACGCCTGCTTCGGGGCGGTGCTCGTGAGGGCCGGGGTGGCGTGGAGCGCCAGGCGCTGATCCGCAGGCGGCCGGACGGGTGCCCGGCTCCGGGTTACGACGCCGGCATCACCCGGCGGGCAGTCGGTACACGTTGCGGGGAAGGAAGATCGGTTGGACTCCGTACCGCAGGACTTAGGCTTCAGGGAGCCTCCGCCTTGCTCTCCGTTCCTCTCGGGCGCCGCCCGTACCGCCTGGGCCAAACATGATCGCAAGACGGACGGGTGGCTGCCGCTCTGGCGGCACATGGCTGACAGCGGCGCTGTGGCGGGCAGGTTGTGGGAGGAGTGG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //