Array 1 49716-49230 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LJCZ01000015.1 Lactobacillus crispatus strain VMC1 VMC1_v1.0_contig_15, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     49715	    36	 100.0	    30	....................................	AGTAGTCTCCAATTCAAAAGGTGCTTACGT	
     49649	    36	 100.0	    30	....................................	AAGCACTTGAATCTTGTCCCTGCTAGGAAC	
     49583	    36	 100.0	    30	....................................	TCGAATTTAGAAAAATCAACATTAACGCGG	
     49517	    36	 100.0	    30	....................................	CCGTGAAAACGGCGTTTACATGCGTAAGAC	
     49451	    36	  97.2	    17	..........G.........................	TATTAGCTTTTGCGGCG             	Deletion [49399]
     49398	    35	  80.6	    30	..ACC.A.C.G..-......................	TAAAGAAATAAATAATAGAGGTGTGAGGTA	TGC [49390]
     49330	    36	 100.0	    30	....................................	CCACTATCGCGCCTGGAATACCTGTTTTCT	
     49264	    35	  83.3	     0	......................-..G.AG.C...A.	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  95.1	    28	GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC	                              	       

# Left flank :   AAAGATTTGACAGTTTCATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGAAATATGGGGTAGCAGTCAAGGATGCTCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATC
# Right flank :  AGTAATATGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTGGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATACCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCTAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA

# Questionable array : NO	 Score: 5.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.70,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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