Array 1 103800-104743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSUM01000013.1 Chelonobacter oris strain 1662 contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 103800 28 100.0 33 ............................ TGACCAAGCGGATTTATTGAGAAAGACCTTACG 103861 28 100.0 33 ............................ CTATCGCGATATAACGTGGCCTCCGCCTCAAAG 103922 28 100.0 33 ............................ TTATCTGGTTAAGGGGATAAAGGTTAAAGTGCC 103983 28 100.0 33 ............................ TTCTGCCGCCTAGTCCTTTGGCTACCAATAAGG 104044 28 100.0 33 ............................ CGAAACGGACTTGAATCCAAAATTGAAAAATCG 104105 28 100.0 33 ............................ TTCTTTCCAAGTTCCAAACGTTATTGTTGATGA 104166 28 100.0 33 ............................ TGGGATTTTGGCGGTTGTGCCGGAATCAGAATC 104227 28 100.0 33 ............................ TTTGATAAGTTGGATATTTATGTCTAAGTATAA 104288 28 100.0 33 ............................ TCTGCCCTGAGCTAGCCCCGCTTTTCTCACGGT 104349 28 100.0 33 ............................ TTAATACTAAAACTAAAGCATCTGCATACGGCG 104410 28 100.0 33 ............................ TAGCTAAAAGCCCTTTAAAATAGCTTTAAAGGG 104471 28 100.0 33 ............................ TATAGTTCACCATATTAGCGACTTTGAAAGCCG 104532 28 100.0 33 ............................ TAAGATCAAGAGGACAGGGGAGTTTTGGCGAGG 104593 28 100.0 33 ............................ TAGATCAACAGCGCAGAACAATTTAATAGATCA 104654 28 100.0 33 ............................ TCATTCATGAAACCGACAGAGAAAACGCAAAGT 104715 28 92.9 0 ..............C........A.... | A [104741] ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 33 GTCTTCTCCACGCCTGTGGAGGTGTTTC # Left flank : TTATACAAAGAAAATTTATGCATTGATTTGGCATTTTCACTTACTAAAACAATGGCGGGGTTATATAACAAACATGCTGTTTCTTCTGCTTTTCGTTCTCGTGTAATTGAAACAGATTTGTTGACTAATATCACCCAAGATATTACTGAACTCCTTGGAGGAAGAAATGCTCGTCGTACTGGCAAATGATTTGCCGCCGGCCGTTCGAGGGCGGATGAAACTCTGGTTTGTTGAACCAAAACCAAACGTTTTTGTCTCTGGGGTGAAAGATTCTGTCGCTAAAACCGTTACGGAATATTTACTCAGTCATTGCTCGGTTGAGAGTGGGCTTGTTATTTTTCGACAAACACCGCACATTCCATATTATGAAATACAGACGCTTGGAAAAACGAAAAAAGAGTTGATTAAAATTTCAGGCTTACAACTTGTTATAGAAAAAAATCTAGATTAAGAAATACTAGATATTGTATTTTTTATTCGCTCTTTTACAATATAGTGGT # Right flank : CTTGTATTACCTATAACAATTTTAATTTCATTATTTTCTTCCTCAAAATAACCGTTATAATTGAGAACGATTACTAATAAAGTGCGGTTTTACAGCGGTGGATTGACACATGAAGATAGTCTATATTTTACTTGGTTTTTTATCGCTCGGCTTAGGGGGGCTCGGTATTCTGCTGCCGGTGTTGCCGACCACGCCGTTTTTATTGTTGGCGCTCTATTTTTTCGGCAAAAGTTCCGAGCGGTTGCACGCTTGGTTTTTGCAAACCGCACTTTATGATAAATATTTGCGCACGTTTGACGAACAGCGGGCGCTGACGGCAAAAAGCAAGGCCTATATTTTGCTGCTTTCCACGGCAATGATGGCGCTCAGTTTTTATTTTATGCCGTCGATTTACGGGCGTATTTTTATCATTTTGCTGCTGTTGGCGGAATACTGGTTTTTCTTCTTCTGGATCAAGACCATTCCGGCGATAAAATAATAGCTTTTTTGTGTGTTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCACGCCTGTGGAGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80217-79313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSUM01000002.1 Chelonobacter oris strain 1662 contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 80216 33 100.0 37 ................................. CGAGAGCTACCCCCCATTTTGACCGGTGGTAAAAAAT 80146 33 97.0 33 G................................ CGTTGTTGCTCGTAAGCCATACGGGGCACAGCA 80080 33 100.0 34 ................................. GTAGCGTTAAATCAGATCAAGGCGAGCGTCTCGC 80013 33 97.0 34 C................................ TAGGTTATCATCTTTTAGGTAAAAGCGAGCATTT 79946 33 100.0 34 ................................. TACGATTTTCAACGAAATCGTCCCCGAAAAATCG 79879 33 97.0 34 C................................ GTTAATTCTGCTGCTTGAGTTGCATCAAAAGGTA 79812 33 100.0 34 ................................. TTTTAACGTGTTGGAACTTTGCCGAAGAAGTGGA 79745 33 100.0 33 ................................. TGATTAAGGAGCAATGAGATGGACTATCTGTTA 79679 33 97.0 33 G................................ GTAACGTCATCATAGGCGATACCATAGGTACTT 79613 33 97.0 34 G................................ TCGTTGCACCAACGCTCACGCTTAGGGTAGAAAT 79546 33 97.0 34 T................................ CTGCATCACATTGCGCAGTCGCAACAGCTTACTG 79479 33 97.0 34 T................................ ATGTCCGACAGTGCAACATACTTGGTTGGGTCTG 79412 33 97.0 34 G................................ AATTAATCGGAATAAAGCGTTTTTTGTTACCTCA 79345 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 98.3 34 ACCAGCCGCCTGCGGGCGGCTGAGTGTTGAAAC # Left flank : AAAAATAGCGCTGGCGGGGGGCTAACATCGTGTTAATGCTGATTACCTACGATATTTCACTCGAAGACAGCGAAGGACAAGCCCGCTTGCGAAAAGTCGCCAAACACTGCCTCGACTACGGCGTGCGCGTGCAATATTCGGTGTTTGAATGCGACGTTGCCCCCGACCAATGGGTGAAGCTGAAAGCCAAATTACTGGAAACTTACCAACCAGAAACCGACAGTTTGCGGTTTTATCACTTGGGCAGCAAGTGGCGGCGTAAAGTAGAACATCACGGCGCCAAAGCCGCTGTAGATATCTTTAAAGACACCTTGATTGTATAGCGCGCTAATCTGTAGTACTCATCAAAACACAGGAAGGTTAGCGATGTTTGATTTCTTTAACAATTTGAAATAAATCGTTGCTTGAATGTGCTATAGTAACGACGAAGTGCTTTCTGCCGGAACCGTTAGCGAAACAGGGGCAAATAGGCCTTGTGGACTAAGGGTTTGGGAGGAGGC # Right flank : AATTAAATCATTGTAAACGAGCTTATATCATTGAGCCGATCCAAATGCGGGAGCGTGTGTTGAAATGGATTACGGAGCGAAACGTAAGAGAGGCTAGTATCCAGCCGCGTATGCGAATCTAAATATTAACTCACCGATACAAAAAATAAATCCCCGCCATTCCAATCAAATAAATCAATCCTGTCCAAGCGAGGTAGAGCAGCCACTGCGGTTTGTTGTCGTATTGCTTTGCCAGGCTGAAATTTAACCAAGCGAAAACAGGGGCGGAGAGGAAGGAGGCGGTCATGGCAAAAGGGATCATTTTGCCGATGGCATTGCTGAAAAACTGGATGACGATAAAGGCCGATAAGGTGGTGAACAGCATGGCGTAGCGCAGGGCTTTTTCCGAATGCAGTTCAACCGTACTTGGAGCCGTATCGGTTTGGCGTAGGAGTACGACTGTTTGTTGATTGCAGCGTGAATAACCGTCTACAGCGACAATGGTGGTGCCGTAGATGCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTGCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //