Array 1 4362005-4362372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034653.1 Xanthomonas vasicola pv. arecae strain NCPPB 2649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 4362005 31 100.0 35 ............................... CAGGCTAGATCCGCCGCAGTGATGGGCGCTTCAAC 4362071 31 100.0 39 ............................... AATTCTGCAAGCACCAGGTGGCCGTTGCCCTCAGCTGGG 4362141 31 100.0 36 ............................... AATGCGGAACGTGAGGGTCCAGAACTGCTGCCACTG 4362208 31 100.0 35 ............................... CGGTGTCATGCGATCACCGTCGGGACTCACGAGGT 4362274 31 100.0 37 ............................... ATGCGGCCACCTGCTGGGCGGCTAGACCACGCACGCG 4362342 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 6 31 100.0 37 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGCAGGCCCATCGTCGCCCCAAGCGCGGCCGCCTCGTCGCGCCCTTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTTTTGCAGGGCCATGCTGACCGTAGAGGAACAAGTGGAGATCAAGATATTGGCCCGACAGGGCATGAGCATCCGGGAGATATCCCGGCAGTTGCAGGTATCGCGCAACACGGTGCGGCGTTACCTGCGCGAGGTGGCAGCGGCCCAACGCAAACCGCGTGGTGTTCGACCCCACAAGTTAGACCCGTACCGGTCCTACATTGAGCAGCGCGTTCGCGCGGCGTATCCGGCCTGGTTGCCGGCCACGGCGATCGAGCAGGAGATCAAGCTGTTGGGCTATCGGGGCGGCTTGTCACGGTTGCGCCAGTTCATGCGCAGCCTGCGTGTGATCCGTCCGGAAGAGCCGCTGGTGCGTTTTGAGACCCCGGCTGGGCAGCAGTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4364384-4366121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034653.1 Xanthomonas vasicola pv. arecae strain NCPPB 2649 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4364384 31 90.3 36 ..T..AA........................ GGGTATGACGCCTTTATCGGCTACGTGAACCGACTC A [4364388] 4364452 31 100.0 34 ............................... ACGCTGGCCAACTACGTCAAGTCGGGAATCATGA 4364517 31 100.0 35 ............................... TGGTCGCAGGTGATGAAGTCGCAAAAGGGCATGAT 4364583 31 100.0 34 ............................... ATTGCGGCGTTCATGGGCCTGACCATCATCGAAT 4364648 31 100.0 34 ............................... CAGCGACAGCGGAGCGGGGGGCAAGGGCGTATCA 4364713 31 100.0 34 ............................... GCTCCCGCGCCACGGCGTCGAGGTTGCCGCTATC 4364778 31 100.0 34 ............................... CAGTTGGCCATGCAGTCGCTCGACTCCGATTCTT 4364843 31 100.0 34 ............................... ACGTCTACGCCCTTCGGGCGTTGGGGTCTGCACG 4364908 31 100.0 36 ............................... CCTTCGGTCCGATTTGCTATCGGCAACGGTAATGTC 4364975 31 100.0 33 ............................... ACGCGCGAGCTGGCCGAGGCCTCCGGCTTCCAT 4365039 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 4365104 31 100.0 34 ............................... CACGCAATGTCCCGTTCGCTCTGGATGCAGGTCG 4365169 31 100.0 35 ............................... TGCCGCTGCCCCTTTTACAGGCAGGCCCGCTACCA 4365235 31 96.8 36 ..............A................ ATCACAGCACTGATGCCGTACTCGATCATGGTCGAG 4365302 31 100.0 34 ............................... TTGGTCTTGGCCTGCCCCTTCTTTGCACCACCTG 4365367 31 100.0 35 ............................... ATTTCATCCCAAGCGGCGATGTTGCCCGTCTGGCA 4365433 31 100.0 34 ............................... TTGATCCGCTGCTTTGCAAATCCTTTTTCCATCT 4365498 31 100.0 37 ............................... TCCGTCACTAGCTCCTCAACCCTATCAAGCGGATACG 4365566 31 100.0 36 ............................... TTCGTGCCAGCCTTCGGATCTTCGGCCGAGGAGATC 4365633 31 100.0 34 ............................... TTGGTCTTAATCTGACCCTTCTTAGCTCCGCCAG 4365698 31 100.0 34 ............................... TTGCGCGCACCTTCGGTGGCCTCGGCGATCTCGG 4365763 31 100.0 34 ............................... GCCCCACGCTCAACAAGGCCTAGGCCGCTGTTGC 4365828 31 96.8 35 ..............A................ GTGTACACATCTGCCGCCCCTAGGTCCGCAGAGGC 4365894 31 100.0 34 ............................... GGCTTTTTCGAGCTGCCACATCGAGGCGGAATAG 4365959 31 100.0 35 ............................... TTATAGGTCTTGCGGATGATCCACCAATCCGGCTC 4366025 31 100.0 35 ............................... ACGCCAGAGTGCGCGGATCTCAAATGACGCCTTAC 4366091 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 27 31 99.4 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ACCCACCTGGCGATCAGCTTGGGCTATCTGGCCACGCAGGCAGGCATGAAAACCCGCTTTGTCAGTGCCGCCGACCTGATGGTGGCCATGATTGCCGCCCAACGCCAGGATCGGCTGGCCGACTTCATCCGCCGCAACGTGATGGGACCGCGCCTGCTGATCATCGACGAGATCGGTTACCTGCCGATGAGCCGCGACCAGGCCAACCTGTTCTTCCAGGTCGTGGCCAAGCGCTACGAGAAGGGATCCATGGTGCTGACCAGCAACTTGCCGTTCGGACAATGGGATCAAGCCTTCGCCGGCGATATCACCCTGACGGCCGCCTTGCTGGATCGATTGTTGCATCACGCCCACGTCATCCAGATCAAAGGAGAAAGCTTCCGACTCAAAGACAAACGCAAGGCCGGCATCATTCCATCCCGCCAAACCGCGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAAGTTGCT # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTTACCGCACTGCCCATTACAGCGCCGCTATCGGTGCTGGCTGCGCCGGTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //