Array 1 869788-870293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020350.1 Pectobacterium brasiliense strain SX309 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 869788 25 84.6 35 .......G.............A-T.. TGCCGGTTACGTCGCGGATCAATTCACCTTTCTAA 869848 26 92.3 34 .....................AC... ACATCTTAAACCTAAAGGCGGCGTCAATTTCTAA 869908 26 92.3 34 .....................A...C CCCACGTCCGCCGTGTGCCGCGTTGCGTTTCTAA 869968 26 92.3 34 .......................A.C CACCTGCCTGACTTTGTTAACGGGGGCTTTCTAA 870028 26 92.3 34 ......................G..T GTTGAGTTAAATGATTTGGTGAGAGATTTTCTAA 870088 26 100.0 34 .......................... AACTGCCGCGCTTCAGTGTTGCGTAATTTTCTAA 870148 26 88.5 32 .....................T.GG. ATCCATTCCGCCTCGGCGATAGAATTTTCTAA GG [870172] 870208 25 92.3 35 .....................A-... CATGTCGGTAAGGATGTCGTTGGTTTGGTTTCTAA 870268 26 84.6 0 .....................CGTT. | ========== ====== ====== ====== ========================== =================================== ================== 9 26 91.0 34 GCTGCCTATGCGGCAGTGAACGTCAA # Left flank : TTCTGGCACGTGAAGCCTGATAGCAGGGGGCTGCGATGTGGATGCAATATGAAATCCGCCTGAAGCCGAAAGCCAGAGGCTTTCATCTGGTGACTGACGAAATACTGGTGCAGGTTACTGGACTGCGCCAGATAAACGTCGGGCTGATGCAGGTGTTCATCAAACACACCTCGGCGGCGCTAACGATTAACGAGAATGCCGACCCCACGGTGCGGCAGGATTTCGAGAGCTTTTTTAATCGCTTAGTGCCGGAGGATGAACCGTATTACCGCCATACATATGAAGGTAGCGACGACATGCCCGCGCACCTAAAAGGTAGCCTGCTGGGCAACAGTCTAACGATTCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGTATCTACCTGTGCGAGCACCGCAACCACGGCGGCAGCCGCTCGCTGGTGGTCACCCTCAACGGGGAATAGCCTCTAAAATGCGTCGCACCAGCGACGCATCCCGATAAGCATTTA # Right flank : AAGTTTTTACGCTAACCACCAGATTGTTAAAGAGAATGCGACTTTTTTGTCGGAAAACCCTTTTTTATTAGGGCGACCAACCGCAATTAAAAATCAATGGGTTGCAGATGGTCGCCAAAAAAGGGTCAGAACCAGGGAACGGTGGCTTCTGCGCTTAGGCCGTAGGAGGAAAAGCGTCCTGCGATAGGGGCGTCCTGTAACGGGCCATGTTCCACAAATACGAAAAACATCTGCCCGTTGGACAAGCTTTTGATTTGCACAAACGGCAGGGCGCTGCGTTTTTCTACGGCATCGGGAATTCGTGCTGCGGCTTCTGCTTCCGTTAACCAGCCTTTGTTCACCGAGCGTCGACGCAGCCGTTCTGCGCTGCTCTTGAGCTGAACGCGGCGCACGGTGCGAAATTTCACGCCGTTGGGTACGGTTTTGCACTCAGAAATCAATGTGTAATCCCGCAATCCTTTCAGCCAGGCCGTTTGCTCCAGCGTCGAGAGCGCCTCTTT # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCCTATGCGGCAGTGAACGTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.70,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [34-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 914830-915397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020350.1 Pectobacterium brasiliense strain SX309 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 914830 28 100.0 32 ............................ TCCTATCGCCTCTAATGCCTTTGCAATCAAGT 914890 28 100.0 32 ............................ ACCGTGCCGCAGCCGCTCAGCCAGTCAGACGT 914950 28 100.0 32 ............................ AATACAACGCAAGTTGCATCAACTGCGTTCGT 915010 28 92.9 32 ........T......A............ ATAACGGGAATGTACTGGCCTTCAAAAAAGGC 915070 28 96.4 32 ...................A........ AGTGATGAGAAAATCACCCCGCGTCTGTTTGT 915130 28 96.4 32 ...........G................ GGCTTTATACGCCGCGTTGAACTCCAGATCGT 915190 28 89.3 32 C..........G.....T.......... TTTAGACTGTGCAACGGACATGATTGATTGAC 915250 28 96.4 32 ...........C................ TGGAGTCTGAATGTTCAGGGGAGAAGATATCA 915310 28 96.4 32 ...........C................ TTCTGAGGCGTAATGTTCGATAAATAATTCAG 915370 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTACCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACTGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CCTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCCAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGACCCTG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 921893-921324 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020350.1 Pectobacterium brasiliense strain SX309 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 921892 28 100.0 32 ............................ CCTTCATGCTGCGGATAACCATCGCCGCCTCT 921832 28 100.0 32 ............................ AGTCTGCCGGATAATCTGTCTGTCGGTGGCTA 921772 28 100.0 32 ............................ TGGCGCACAAAAACCAAAGTGGAAATTTACAT 921712 28 100.0 32 ............................ AAGAACGGTACTTATCCGCCACGTTCATCAGA 921652 28 100.0 33 ............................ CCTGAGCGCATGCCGCAAGAGTTCGTCGATAAA 921591 28 96.4 32 A........................... GGCTTACCGTCAACGCGAGTTACGCCGCCGCA 921531 28 92.9 32 A..............A............ ATTCACGATGACGAACGGCCGCCGCATCGATG 921471 28 89.3 32 .G......T..C................ CACGGAACCAGCGGCAGCTTGCCCGCATCAAC 921411 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 921351 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4459146-4456981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020350.1 Pectobacterium brasiliense strain SX309 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4459145 29 100.0 32 ............................. TTTGGCTCGCGCGTGCGCTATCCGGTGTCGAG 4459084 29 96.6 32 ............................T GACAGTGCGGGCATTTGGGCGGTAGTGGGCGC 4459023 29 100.0 32 ............................. CCGGTGATCAACGCGAGTAATCAGCCACTCGC 4458962 29 100.0 32 ............................. GACGGTGAAAAGCTGAAAATTTCTTATCACTC 4458901 29 100.0 33 ............................. ATAAGAGCGTTGAGTACGGATATGTATTCTCTC 4458839 29 100.0 32 ............................. CAGGTGGACAAGGATGAGCTTAATCGCCGTAG 4458778 29 100.0 32 ............................. TGCCAAAGCGCCCGTGCGTATGTAGTCGGGGC 4458717 29 100.0 32 ............................. CTGTCGGGCGATATCCGCGATTCACAGACCCA 4458656 29 100.0 32 ............................. GCTCTTGCTTGCCCGGTTCTGATTGCTGTCGA 4458595 29 100.0 32 ............................. CGAACGTGATCCCCGTTCGCCGACCTTTCGGG 4458534 29 100.0 32 ............................. CTGCCAAATGATGTCCGTTCACACATCGAACG 4458473 29 100.0 32 ............................. CATCCCAGAAGTGCTAATCCTGTATTGAGGTA 4458412 29 100.0 32 ............................. TGAAATCGGCCCTCACTCAACGCCAGGACGCG 4458351 29 100.0 32 ............................. CCCGCGAGGGGGATTATCTGGTTGGCACGGAC 4458290 29 100.0 32 ............................. GCTTTTACCCACTTTTCCTTTCAAACGGTCAT 4458229 29 100.0 32 ............................. GAAAGCAAAATGCAAACATTTGACCAGGCCAC 4458168 29 100.0 32 ............................. TTGGCGGCTTGTGGCGTATCTTGATTCATCAG 4458107 29 86.2 32 .......T..T..G.........G..... GCGATCAAAGAAGCCATTGAAAGCGGAGTGGA 4458046 29 93.1 32 A.A.......................... GGCCAAGTAGCTCCAGCCAGACAAAAAATCCA 4457985 29 93.1 32 ............GT............... ATTGGGCACCGCGAGTGCGTCATGCAACGGGC 4457924 29 96.6 32 ............T................ AACTTGATGCGGAATGATCCCTCCGCTTTGAA 4457863 29 93.1 32 .A.......A................... TATGTTGAGCGGGCTAACCTGTCGTCTCTGAC 4457802 29 100.0 32 ............................. CGGATTGACGAGGTGTTGATTCGTTCGACGCT 4457741 29 89.7 32 .A.......A...T............... TTAGAGTCAGCCGGTCGGTACACAGAATTCCA 4457680 29 96.6 32 .A........................... CCTTTTGCGCGGCCAGTGCGATTCATTGTCTT 4457619 29 96.6 32 ............T................ TCTAAGTTGGAAGCGGCGAAGCGGGCGCGCAA 4457558 29 96.6 32 ........T.................... AGTGGATCCATTGGATTATGGAGCGTAGGCAT 4457497 29 96.6 32 ..............G.............. GTTGAGGATTTCAATGACTACACCGTTTTTAC 4457436 29 93.1 32 .............T.A............. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 4457375 29 89.7 32 .A......T...T................ TCCAGGCAGTTAGTTAGCGGATTTTCGTGCTC 4457314 29 96.6 32 ............T................ CGGTCTGAATCAGACATCATCCAGCACCTACA 4457253 29 93.1 32 ........T.T.................. TATTCATCCAGATACAGGTTTCCAGTGTAGCT 4457192 29 96.6 32 ..............G.............. TAAACACGAAAGTCATCGGGTAATTGCGTCGA 4457131 29 93.1 32 ............TT............... AAAAACAACTTTGGCGTCGTGCTGCCCGCCAA 4457070 29 96.6 32 .........A................... CATGCTGGTTAAGAATGAGAAGCTTAACGGGT 4457009 29 89.7 0 .A.........A...............T. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 96.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGAGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAATCGACGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGAACCAAATCCCGCGGCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATTA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //