Array 1 61297-64171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQD01000041.1 Streptococcus iniae strain QMA0445 NODE_2_length_94498_cov_106.495_ID_7483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61297 36 100.0 30 .................................... CTTTCCCGAAAATTCAGACACATACAAGAG 61363 36 100.0 30 .................................... CAAATATTTAAGTATTTTTACGTGAAGGGG 61429 36 100.0 30 .................................... TTGTGTTCCGTCTGAAAGAACTAGTGTGTT 61495 36 100.0 30 .................................... TTTGAGAGTTCCACGCAGATATGATCTCGA 61561 36 100.0 30 .................................... TCAGCTAGCCATTCCTCTGTTAAGATTTGT 61627 36 100.0 30 .................................... AGCTCGTTTAGTTAAAAAGATAACTGATGA 61693 36 100.0 30 .................................... TTTGGTCTGGTATATACGACTTAGATATAT 61759 36 100.0 30 .................................... TTCTGGAATACCAACACCAGTTGCATATCT 61825 36 100.0 30 .................................... ACTCTCATATGTTGCATCAACTTCGCATTC 61891 36 100.0 30 .................................... ATGATGATCTAAGAAATGGTATTAGGAACA 61957 36 100.0 30 .................................... AATGTTTGACTTGTGTGTAGCCTATCAAAT 62023 36 100.0 30 .................................... GCCTACCTCTCCTTTTGAGTCAGCGGGTAT 62089 36 100.0 31 .................................... AGCTAAACTTGGAACAGTTACTTGGTCAGGA 62156 36 100.0 30 .................................... CAATATAGACACCCATGTAATCTTGATCGC 62222 36 100.0 30 .................................... ACTACTGCTTACATTTGGTACAGGCGCATT 62288 36 100.0 30 .................................... CTTGTATCCGTTGAGGATAAACTCCTTCGA 62354 36 100.0 30 .................................... ATCGATATATATGAGCAAAGGCCTAACGAT 62420 36 100.0 30 .................................... TTTATTATAATCGTAGCAGGTGACTAATAT 62486 36 100.0 30 .................................... ACCACTTATTGTAACTGTAGATGCCTACAT 62552 36 100.0 30 .................................... CCAAAAAAATGGGTGATGCTTCTAAAGGTT 62618 36 100.0 30 .................................... TTTAGAAATGACTGAATTACTAGACTTGAT 62684 36 100.0 30 .................................... TGAAGAGGGGATAGCAATTGGTGATAAAGA 62750 36 100.0 30 .................................... TTCGTTTGGCATTAAACTTGCAAATGATGT 62816 36 100.0 30 .................................... TACAAGCTGAGCACGTAGTCCGTTTATTTG 62882 36 100.0 30 .................................... TGCGCTCCTCGAGAGCAAGCAACTGCGCTT 62948 36 100.0 30 .................................... TTAAAACTTTCAAAGCCATCAATGTCACCA 63014 36 100.0 30 .................................... CGGCATCTGATAAAGAATACTTACGCATAA 63080 36 100.0 30 .................................... GCCGGCGCTTGTTCCGGCGCTTGTTGCCTC 63146 36 100.0 30 .................................... CCTGCGAATAATGAGGCATACATCTTCAAA 63212 36 100.0 30 .................................... CAACGTGACAACTGCAAACGGTGGAACACT 63278 36 100.0 30 .................................... ATTGTAGATATCCCATTCATCTTTTGTAAT 63344 36 100.0 30 .................................... ATTAAAAGTTGAGGTCGCACCTTATAACAC 63410 36 100.0 30 .................................... GAAGATGATTGTTTGGGCGTTATTTGATAG 63476 36 100.0 30 .................................... TATGTGACAGATTTTATTTACAGTGCAGTT 63542 36 100.0 30 .................................... GGTATTAATAACTTACGGTCATAGTCAATA 63608 36 100.0 30 .................................... CTTTGCGGGACATATGACAAGTCTAAGTCA 63674 36 100.0 30 .................................... ATTAAAAGTTGAGGTCGCACCTTATAACAC 63740 36 100.0 30 .................................... GAAGATGATTGTTTGGGCGTTATTTGATAG 63806 36 100.0 30 .................................... TATGTGACAGATTTTATTTACAGTGCAGTT 63872 36 100.0 30 .................................... GGTATTAATAACTTACGGTCATAGTCAATA 63938 36 100.0 30 .................................... TGTTATATCTCCATGTTTGCAGTTGTGACT 64004 36 100.0 30 .................................... TCTAATAGTGGAAGCCATGCGATCAGATAA 64070 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 64136 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.4 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //