Array 1 6547-5258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUJ010000007.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1435 NODE_7_length_130541_cov_62.111525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6546 36 100.0 30 .................................... TGGGCAAGGTGCTGAAACACTATTCTGCGC 6480 36 100.0 30 .................................... GTAATTGAATTATGCCCCAAGCGCTTCGAG 6414 36 100.0 30 .................................... TCGTAACCCGTCTAGATTGTCTAGAATGCC 6348 36 100.0 30 .................................... TAAATAGATGTCAGATGAAATGGCGTATAT 6282 36 100.0 30 .................................... CATCAGTTCGCACATTTAAAAACGACATGT 6216 36 100.0 30 .................................... CTGACTTTTGATATCAATAACGGCAATGCA 6150 36 100.0 30 .................................... TGAATATACGTCTTATACCAATACTTGTTA 6084 36 100.0 30 .................................... TTTGTCAATGTAACGTAACTTAAAATGGTA 6018 36 100.0 30 .................................... ATGTCTCAATATTTAACAGTCCATTTTCCA 5952 36 100.0 30 .................................... AGAGAGATGGCATTTGCCGTAAGGAACCCA 5886 36 100.0 30 .................................... TTTCGCGGAAAAACTTCGGCACTTCTTCAA 5820 36 100.0 30 .................................... AACTGCCGCGATCCAACCATTAGAGCTTAC 5754 36 100.0 30 .................................... TTCCATCTTTGACCGTGAATTTTACAGTTG 5688 36 100.0 30 .................................... TCCATTTGCTTCGATTTTTTTCCGGATTAA 5622 36 100.0 30 .................................... GGATATAGCTACATACAAATAAAAATCCCA 5556 36 100.0 30 .................................... TATGGCGACATCGTAGCAGACGGATATCAG 5490 36 100.0 30 .................................... TTGAAGAGCTGAAACTTAAGGGATATGAGG 5424 36 97.2 30 .................A.................. TTGCCATTGGTTTATCAATTCCATACTTAT 5358 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5293 36 77.8 0 ......A......A......A..G....G...T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATCAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAAAAATTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGATCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAACTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAATCTTAAATTTCGAGGCAAACATTGACTGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGATAGAGAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 662-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUJ010000091.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1435 NODE_95_length_661_cov_2.027397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 661 29 100.0 35 ............................. AACACAAACTTACCACAGTGCTGGCATAAGCCACC 597 29 100.0 37 ............................. TTTGAAATCAAAACTAGGTCGAGTAGCGTGCAAACAG 531 29 100.0 36 ............................. CTAGAAGGAGCGAAAATGGAAGTTAGAACCTCTAAA 466 29 100.0 36 ............................. GTAGCAAAAGGCAAAAAAGTAGATATGGTCGACTTT 401 29 100.0 36 ............................. ATTGACCGAACTTGAAAAATTGACTCAAGATTATGC 336 29 96.6 36 ..........T.................. GAAGAAACAACTAGAAAACACAGCTAAGAGCATCGC 271 29 100.0 36 ............................. GAGTATTGTTCGCTCAGTTCGTTGAATTGTTTTTCA 206 29 100.0 39 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGTGCG 138 29 100.0 34 ............................. ACGGATTAATGACCGCGGTGTATTCATGGATGGG 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 99.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : | # Right flank : TACTAATTTCATCAAATCAGATAATATTTTTATCAAAAGTTTTAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1144525-1143252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUJ010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1435 NODE_1_length_1202054_cov_42.856914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1144524 29 100.0 38 ............................. AGGTTTTCCAGACTGGGCATTCGCTGCAGCGGCGAAAG 1144457 29 100.0 35 ............................. CCTCCTTCCGGTGTGGCTTCCAGACTAGAAACTAC 1144393 29 100.0 35 ............................. TAATCTGTTTTAGTCCCTCTAACTCTTTTATTATT 1144329 29 100.0 38 ............................. CAAAAACAACTAGTTCAACCAATTTGGCTGGTGGCTTG 1144262 29 100.0 36 ............................. CTTGTATTTTTTGTACAACAAAAAAGGACAAGTGAC 1144197 29 100.0 35 ............................. TTTGTACCAGGGATCTTTTTCCCAGTTCTTTTATC 1144133 29 100.0 36 ............................. GCATATACATTCGTAATAATATCCTCGGGTTTTGTA 1144068 29 100.0 36 ............................. AAAAATACAGAGAGTGAAAATGTAGCTGTACTAATT 1144003 29 100.0 37 ............................. AAGCTACTTACTGCTTGGTCTTTATCTTCTTGCTCGA 1143937 29 100.0 37 ............................. CAAAAGAAAGATAGTTTTTTGAAGCATCCTTGGGTAC 1143871 29 100.0 36 ............................. AAACGAGGTTCGGCACACTAGTTGTTTCTTTGTCTT 1143806 29 100.0 36 ............................. GTATCAGAATACTACGTAGAGCGCTGGGATGATTAC 1143741 29 100.0 37 ............................. AAAGTTTCGTCTTCGCCGTCTAAATCGTTCCAAAACG 1143675 29 100.0 37 ............................. TTTTCAAGTTTTTCAGACATTCTATAAATACTTGTCA 1143609 29 100.0 36 ............................. ACTACTGTTCCTGCGCCTCCGCCGACTATTCCCCCA 1143544 29 100.0 36 ............................. ACTTCATTTGCGATCAGGCTTACTTGTTCATTCACA 1143479 29 100.0 37 ............................. AAATTAAATACAGTATTGGTTCGACTTGGATTCCAAA 1143413 29 100.0 39 ............................. ATGTTAAGTATTTGGTTCAAGATTTTAGAAGGGGAATTT 1143345 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 1143281 29 86.2 0 ...............C......CC....C | A [1143256] ========== ====== ====== ====== ============================= ======================================= ================== 20 29 99.3 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : AGCATTTAAAATTTGGTGGTGAAGATATGTATGCAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGCTTGAAGCTTTTTAGCCGAAATCTGAAGGGATAAGCTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGTCCCAGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAATCCATTATAAAGTCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCAACACCAAATGTTTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGTTCGATCATTACGATGGAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1160878-1160089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUJ010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1435 NODE_1_length_1202054_cov_42.856914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1160877 29 100.0 38 ............................. TCGTCACTGGCGGAGACAATATTAGGAACACTAGTTGT 1160810 29 100.0 36 ............................. TCTTTTTGATGTTTGGCTGCATTATCTAATGCCAGC 1160745 29 100.0 37 ............................. AATGAACCAGTTTTAAGCGGTGTCACTTTGTAAGCCT 1160679 29 100.0 35 ............................. CTTCAAGGTGATGGGTTCTCATCTGATTTCTATAT 1160615 29 100.0 19 ............................. TCAATAGGAACACCGTAGT Deletion [1160568] 1160567 29 96.6 34 .......................A..... AAAGTTACGGCTAAATACATGTCTAAGCTTCTTT 1160504 29 100.0 35 ............................. CTGGCAACAGCCGCTAATTCGTTGACAGACCACCC 1160440 29 100.0 34 ............................. TGGCTAAAGGCAAAAAAGTAGACATGGTCGACTT 1160377 29 96.6 34 ....................T........ CATTCAATAAACTAATAAACAAAAATAATAAAAA 1160314 29 100.0 37 ............................. TAATCATTTTTGCCACATCGACGTTTAATGTGTCGAC 1160248 29 96.6 36 .........G................... GATACTACGACAATGCACAGCGCAAAAACAGGTTCT 1160183 29 100.0 37 ............................. CAACGAATTCCGTTTTTTTAGAATGTTGCTGCCGCCA 1160117 29 86.2 0 .......T.......CA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.2 34 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGTTTACAAAGCTCCAATATCAAAGAAGTCATCACATCCGACTCCATTGATCTTCCAGAAGACAAGCAATTTGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGATTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTTTTTGGTTGTCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTTATTGGCGTGGAGGGAGTTTGGTGGTTTTTTCTTTTGAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTTCAGATACAACTCCATCCTCGTCTATCAAGAATAAAAAGAGTGACTGCGATTTCAGCAGTCACTCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTTTCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAAACTTCTACTTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 104-801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUJ010000054.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1435 NODE_56_length_938_cov_1.773519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104 36 100.0 30 .................................... ATATGGATTCTGACGATGCTATATATTTGA 170 36 100.0 30 .................................... GACTTCTCCCGATGATTGGACTGCTCCCTT 236 36 100.0 30 .................................... CTATACTTCAAAGTACACCGCGCTGACGCA 302 36 100.0 30 .................................... AAATAATTATTAAACGGAGGTAATAAATTA 368 36 100.0 31 .................................... CACTAATCATTTTTAACAATCCGGTCATTGG 435 36 100.0 30 .................................... TGGCGATTTAGTAAAAAGGCTCTCGAAGAT 501 36 100.0 30 .................................... CCACATAATGGACTGGCGCCATTTTACCTT 567 36 100.0 30 .................................... TTATGCAATGATGCAGAACATCAAAATACT T [577] 634 36 100.0 30 .................................... TAGTTTAGATAATGCCGCTTGTACATTTGA 700 36 100.0 30 .................................... TGCGAAAACAGCTGAAATTAAAGACGTAAC 766 36 77.8 0 .........................A.C..TGTTTA | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAAATTCTACGAGGG # Right flank : AGAAACAAAAGTTTTTCATAAACCAGTTCTTAGTAGATTTTAAAAAGGAGATCACCATCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTCCTCCTAACAGCGTGCTCAACCACCGAAAAACAAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //