Array 1 913230-912001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPC010000020.1 Pseudomonas gingeri strain C2001 run0228_C2001_S18_L004_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 913229 28 100.0 32 ............................ AGCTCATCAGCCGCCAGTGCCAGTTGGGCTAC 913169 28 100.0 32 ............................ ACTTAGACTTAAGCTTATCGATCTTAAGTTCA 913109 28 100.0 32 ............................ TGCCTCGACTATCTGACTGGCCCCTTTCTCGC 913049 28 100.0 32 ............................ GATGCGCACAGGCCGCACGTTGTTGCAGCCGT 912989 28 100.0 32 ............................ CGGCTGATCGAGCTGGGCACCATGCTGCACGA 912929 28 100.0 32 ............................ ATGTGCAGGATCGGGTTGATCTGGTCGCTGGT 912869 28 100.0 32 ............................ AGTTCGAAGTTCAGGTACTCACCGGTCCGCGA 912809 28 100.0 32 ............................ GGTACATCAGTCTCAGTAAATGTCATTGTCAT 912749 28 100.0 32 ............................ TTCCAGCTTTCTGAGTTGCTCGAACATTATTT 912689 28 96.4 32 ..................C......... TGGGCGAATTCGTCCTGCAGGAAGCCAAGGTC 912629 28 100.0 32 ............................ TACATCTCAATGTCAGCCGCTATAGCGGCAAG 912569 28 100.0 32 ............................ TCGACCAGGCTGAGGTTGTTGCTGATCATGCT 912509 28 100.0 32 ............................ TGCGCACCGCGGCTATCGAAGGGCTGATGGAC 912449 28 100.0 33 ............................ CGGGTCCGCGCCATTGGCATCGCCGATCAGCAT 912388 28 100.0 32 ............................ GCGTGTCGCTTGCCGCTGAACAGAAAGTAGAT 912328 28 100.0 32 ............................ CAGCTGGGCAGAATCCGACGCCGGGATAATTG 912268 28 100.0 32 ............................ TTGCCGAAGTTGTCGAGTGGCCACGGACGAAC 912208 28 100.0 32 ............................ ACCTCGCCCTGCTGGGCTGCGTCCAGGCCTGG 912148 28 100.0 32 ............................ ATCATCGAAGTGCATGGTGAACGCGTTGTAGG 912088 28 89.3 32 ..G........CA............... ATGGCCGTTGGGGTCAGAGGCTGACTCGCTTC 912028 28 82.1 0 ...........CAC.........G...G | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGGCACCTTCAACGGCTATGGCCTGAGCAGCACTGCCACCATCCCCTGGTTCTGACCCTCTGGACCCTTTTTTTTGAGCAAGGCAGGCCCCTTCGTAAAATCAAGGACTTACGAAGGGGCCAAAAAAGAGGGGTAAGGACCCATTTCTCCGGTATTTGTCTTTGCAGACAGGACCTTACCGGGAAAAGCGTCTAGTTCACTGCCGTGTAGGCAGCTCAGAAAGCTTGCGGCGCTTGGTCGTACAGGCCGCAGACGTTCACTGCCGTGTAGGCAGCTCAGAAAAACGCTCAATGGACCCTGGATGGCGATGCGTTGTTCACTGCCGTGTAGGCAGCTCAGAAAAACACGTTTCGACAACGAGCTGGCAAGAGCGCGTTCACTGCCGTGTAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTGTAGGCAGCTCAGAAATGATGGATTCGGTTGATGCCTTCGGCGACGTA # Right flank : GCAGTCCGGCATGATCAGCAACCCATGTCTTTCACAAGTTGGCCTCGCGGGGCGTCATGGAGAGCTCCGCATTGAGCTTGTTCCGACTGAGCTTTGTGAGAAGCGATGTACATAAAACCGGGGGCGCGGGTATTTCGGTCTACACCCGCTGCTTCGATAAGCGGACCTATGCCTCGTAGTTCAGGCTTACCGCGTATGTGTGTTCTTCTTTACTTCCGACCATCTCGCCGTTGGCATAGATGCGAACGTCCGTCGTCAGCTTTGGACGGTCTTTGGTGTTGTTGGCTACATGGATCACGACACGCTTTTTCGACCTCACGGGAATGACCGAGAGCCTGGAGCTGCTGGGACGCCGTATACGCGCCCCGGTGCTCAGAAGCACGGGTATACCGGTTGGGGTGGGCATTGCCGTGCTGAAGCTAGGACTGGACTGTCAATCCAAGAAAGCATTTCTGAAGCAAGCTGGGAGGCAATCGCCACACGATGCCGGGACGAAGAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 913536-913388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPC010000020.1 Pseudomonas gingeri strain C2001 run0228_C2001_S18_L004_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 913535 28 100.0 32 ............................ GCTTGCGGCGCTTGGTCGTACAGGCCGCAGAC 913475 28 100.0 32 ............................ AACGCTCAATGGACCCTGGATGGCGATGCGTT 913415 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTACTGGCGCTGAACTGGCTGACGGGTATGCGGGACCATGTGCAACTGAGCGAACTGGCTGCTGTGCCGGCGCAGGTGCGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCCGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGCGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCGGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTGCGCAGCAACGGCACCGGACAGGCATTTGCGCTGTTCATTCGCCACGGCGCCATTGTGGAAACCGCCCAGGCGGGCACCTTCAACGGCTATGGCCTGAGCAGCACTGCCACCATCCCCTGGTTCTGACCCTCTGGACCCTTTTTTTTGAGCAAGGCAGGCCCCTTCGTAAAATCAAGGACTTACGAAGGGGCCAAAAAAGAGGGGTAAGGACCCATTTCTCCGGTATTTGTCTTTGCAGACAGGACCTTACCGGGAAAAGCGTCTA # Right flank : AACACGTTTCGACAACGAGCTGGCAAGAGCGCGTTCACTGCCGTGTAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTGTAGGCAGCTCAGAAATGATGGATTCGGTTGATGCCTTCGGCGACGTAGTTCACTGCCGTGTAGGCAGCTCAGAAAAGCTCATCAGCCGCCAGTGCCAGTTGGGCTACGTTCACTGCCGTGTAGGCAGCTCAGAAAACTTAGACTTAAGCTTATCGATCTTAAGTTCAGTTCACTGCCGTGTAGGCAGCTCAGAAATGCCTCGACTATCTGACTGGCCCCTTTCTCGCGTTCACTGCCGTGTAGGCAGCTCAGAAAGATGCGCACAGGCCGCACGTTGTTGCAGCCGTGTTCACTGCCGTGTAGGCAGCTCAGAAACGGCTGATCGAGCTGGGCACCATGCTGCACGAGTTCACTGCCGTGTAGGCAGCTCAGAAAATGTGCAGGATCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 925054-924785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPC010000020.1 Pseudomonas gingeri strain C2001 run0228_C2001_S18_L004_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 925053 28 100.0 32 ............................ TCCAGCATTTGGCTACAGCAACCAGTTCCAAC 924993 28 96.4 32 ........T................... AGCTTGGCTTCGATCACGGTTTGGTCGCACAC 924933 28 96.4 32 ............G............... TTCAACTACGCGGCCGGAGAGATCGAGGAAGG 924873 28 96.4 32 .......A.................... AGAGTCTGCAGGGCCGGCGATTTAGCTTGTTC 924813 28 75.0 0 T.T..T....T.GC.............C | A [924788] ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.8 32 GTGCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GCCGCATGTCGAGGCGATCAACGCCGCGTGTAGTTTTCTAAGCTGCCTACACGGCAGTGAGCTCGGGCGCTCGCGCTTCGGTGCTGCGAACTTCTTTCTAAGCTGCCTACACGGCAGTGAGCTGCTGCCTCCTTGATCCGCTGCGCACGCATCATTTCTAAGCTGCCTACACGGCAGTGAGCTAGGCGCTTTTCCTAGCAAGGCCTTGTCCGTAAAGACAAATACACTACCTTCGCCAGCTTAACCCTCTTTTTTCACCTGCTTATAAGTTATTGATTTTACAAGGCACAAACTTTCCCCAAAAAAGAGGGTCAAGGCAGGGAGATCGATGAGGCCACCCTGGACATGGTGCGGGTGTCACTGAAATGAAGGAGGCATCCTCACTCCACAAGTCTCGGAGGCATGCTCTACCTCTTGGCGCCCAGCTATCTCCGGGACAGTGGCCACTCGTACAGGTACGCTTGCCAGAGACGCCGTGTCGCTTGCCAGGGCGTCCGCCC # Right flank : GGTTGCATTTTGTTCTCATCGCAGGCCTCTTCGACGGGCGTTTAGCGATGCGTTACAATAGGCACATGTGCATTACAGAGGCATGCCATGCTCCATAAAGACAAGCTTTTGTGGCTCATCGAGCGAGCTGGTATTACCCAAGCCCGGGCTGCGGAGCTGATTGCTCAGGAAACCAAACGTCCCTGCAGCGTGCGTAGCGTTCGGGCTTGGCTGGCAGATCCAGCAAAAACCAGTGCGAGGACATGTCCCGAATGGGCGATCAACGCCTTGGAAAGTCGCCTGCGCTTCCTCAAAATGATTGCTTGAGAATAGGCACAAGTGCCCTATATGACTGCCCGTCGTGGCTCACTGGAAAGCACCCAGCAGCCTTGGGGTATCCAGGGTACCTATTCGTTGTCACCCGAATGACCGGAGATACCGCCCATGCTTAAAAACCTGACGTTCGAAGGTGTTGGTCCTGCTGAGAAGCTTGCGATTGACTTCAAGTCGCGCCTGAACTT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 925372-926239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPC010000020.1 Pseudomonas gingeri strain C2001 run0228_C2001_S18_L004_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 925372 28 100.0 32 ............................ TGATGCGTGCGCAGCGGATCAAGGAGGCAGCA 925432 28 100.0 32 ............................ GAAGTTCGCAGCACCGAAGCGCGAGCGCCCGA 925492 28 100.0 32 ............................ ACTACACGCGGCGTTGATCGCCTCGACATGCG 925552 28 100.0 32 ............................ TGGCTCAGCGTCCGCAGAGCGCGACAGCTACA 925612 28 96.4 32 ..........T................. ACATCGCGGACTTCCAAAATTTCGCGATCCAG 925672 28 100.0 32 ............................ CCGAGCCGGTGGTCACCGACACAATTGAGCTG 925732 28 100.0 32 ............................ TGGCGATGGCATACCAGGCGACAGCCTTCGGC 925792 28 100.0 32 ............................ TAGAACCGGCACGCTCCAAAAGAGCCTCATCC 925852 28 100.0 32 ............................ TTCACGTCTTCCTTTCGCTCGACGATCAGCTT 925912 28 100.0 32 ............................ ATATCGAGCAGCCTTCACCAGGACTAGAGGCC 925972 28 100.0 32 ............................ TGGCACATCTTCAATGCTGCGTTCATTGTCGC 926032 28 100.0 32 ............................ AATTCGATCACCCGATCTTCCTCGGCACACGA 926092 28 96.4 32 ............T............... AGGTGCTGCAGCAGTACCTGGTGCAGATCCTG 926152 28 100.0 32 ............................ AGGTGCTGCAGCAGTACCTGGTGCAGATCCTG 926212 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCCTTCCTCGATCTCTCCGGCCGCGTAGTTGAATTTCTGAGCTGCCTACACGGCAGTGCACGTGTGCGACCAAACCGTGATCGAAGCCAAGCTTTTCTGAGCTGCCTATACGACAGTGCACGTTGGAACTGGTTGCTGTAGCCAAATGCTGGATTTCTGAGCTGCCTATACGGCAGTGCACGGGCGGACGCCCTGGCAAGCGACACGGCGTCTCTGGCAAGCGTACCTGTACGAGTGGCCACTGTCCCGGAGATAGCTGGGCGCCAAGAGGTAGAGCATGCCTCCGAGACTTGTGGAGTGAGGATGCCTCCTTCATTTCAGTGACACCCGCACCATGTCCAGGGTGGCCTCATCGATCTCCCTGCCTTGACCCTCTTTTTTGGGGAAAGTTTGTGCCTTGTAAAATCAATAACTTATAAGCAGGTGAAAAAAGAGGGTTAAGCTGGCGAAGGTAGTGTATTTGTCTTTACGGACAAGGCCTTGCTAGGAAAAGCGCCTA # Right flank : ACTTTGGTCAACATCTCGCCGGGTGCCAAAGGGCACACATTGGGTAGTCGCCTGCCTGCTGCACGATGACTCAACCCGAGTTCTCCGGCATCGCCTCAAGAAATCTTTGTTTGTTACATCATGGCATTTGGCTATTGATCTACGCTCTCGGAAGGCATCGACCAGGTCCTGCCTTGCCTCATACCGGTTTGTCGTGCTGATGAGCAGGCTGGGTTCATTCGAACATCTGTCAGTCAGTGGCGCTGGCGCTAATGAAGCAGGTCAAATCTCAAGGAGCGATTCGATGCCTCAAAGAATATCCATCGATAAAAATGTCATGGCTCTGATAATGGATGGCGTTGATTTTGACACGGTGTCCATTTTTTATATTGTCGGGCATGGGACAAAAATTGATAAAAGATTCATTACCGATATGAGTGTGTATTTTCCATGGGGAATAGACAACTATGGATGGTATGAGTCGGATACTGGTTTTCCACTACTCGAGATTTACAACTGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 928100-928668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPC010000020.1 Pseudomonas gingeri strain C2001 run0228_C2001_S18_L004_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 928100 28 100.0 32 ............................ TTTCGCTCGACGATCAGCTTGATTCGTTTGTT 928160 28 100.0 32 ............................ TACAAGCCGGCTCGTAAGAAAAAGACTGAGAA 928220 28 100.0 32 ............................ TGTCGCTGGACACGAACAGCAGTCTCCAGTTC 928280 28 100.0 32 ............................ CAGCACCGGGCGCCGAGCGATTCTCCCGGCGC 928340 28 100.0 32 ............................ AAGGAAATCGGTGATTCCGGGCCGGTCATCGG 928400 28 96.4 32 ................G........... ACCTCCAGCAGCTTGAGAACCGGGTCGCTCTC 928460 28 96.4 32 ................G........... CGGCAAGGACTCCCCATGCCTACAGAAAAAAA 928520 28 96.4 32 ................G........... GTCCGGATCGTCTTCCCGGGCCTCGCGCTCGG 928580 28 96.4 32 ................G........... TGGTTCAGGGAAAACGAAAATGGTAATCGGGT 928640 28 85.7 0 ..T..........C..G........C.. | C [928664] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.1 32 GTGCACTGCCGTATAGACAGCTCAGAAA # Left flank : TGGCTTTGAGCACGGTGGCAAAGGCTGTTTTGAGCGACATAAAACGTTCCTGACAGTGGTGCACTTCTGTACCCATCGGGCGACTTGTCCAGATGTAAATCGACGTTCCAGAGTCGTGAGGCTACCACAGCACCGGGCGTCGTTGCCTGATGGTTTCAGGGCATCATGATTTTCCTCCAGGGTGCGAGGGACATGCCTGAGACTGATCGCTACCTGCCAACTGGCAGAGGTCATGAAGGTGATGGCTATGCTGGAGCAGATCAAGCAGTGATGGGGCAGGGGGCGCTACGGGCGGCCAGTTGCCCGCTGAACCCCGAGTGGGGCATGTTTTGGGAGATGATGAGCCGCCGCACAATTCCTTCTGTCTTGACCCTCTTTTTTTGGTGAAAGTTTGTGCCTTGTAAAATCAAGTACTTACGAATAGGTGAAAAAAGAGGGTTAAGCTAGCAAAAGTAGGGTATTTGTCTTTATGGACAAGGCCTTACCAGCAAAAGCGTCTA # Right flank : AGAATGCTGCCTGTGTGGCGGAGAGCGGACTAATGCCCGGACCTGGTTTGGACTTCTGGAGAACCCACTGGTAGCCCATACGGGATACCTGGCACAGCCAGAAATCGCGGAGATCGTCGTGAACGGCTACAAGCCGGATGCGGACGACCATTGAGCTCTGCCCCCGCGACAGCGATGGCAGAATCACGACAGCTCTCGGCCAATCGGCTTCAAGCCTGGCGAAACTCGCTGGGCGTGACGCCTGCTTCGCGGCGAAACACCTGCGAAAAATGACTGGGGCTGGAATACCCGACCTCCAGCCCTACATCGATGACGCTGCGGTGGGTCTCGAGCAACAGATGCCTTGCACGGGCCATGCGCAAGCGGATGAAGTACTGCGAAGGCGACAGCCCCGTCGCACGTTTGAACATTCGACTGAAGTGGTACGCGCTGAGTTCGGCAAGCCCGGCCAGTCGGGCCAGGCTGAAGTCGTCAGCCAACTGCGCGTTCATCGCGTCGAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGACAGCTCAGAAA # Alternate repeat : GTGCACTGCCGTATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //