Array 1 56-1879 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSFN01000026.1 Paenibacillus crassostreae strain LPB0068 PNBC_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 56 32 100.0 34 ................................ TTCTACAGCATCTCCATCTTCACTAATCATCGGA 122 32 100.0 33 ................................ AAATGACTGGGCAAGGTTGTAGACAATATGAAA 187 32 100.0 33 ................................ AGCTATCAGTGTCGGGGAGTTCATAACGATTAA 252 32 100.0 35 ................................ TCAAAAGATCGAGCTACTGAAGCAATCGACAAACT 319 32 100.0 34 ................................ CTGTAGGGATATCCATATCTCTTATCTCTACTTT 385 32 100.0 34 ................................ TTTCAATGTCTTGATCGTATCTGACGATAAAGCG 451 32 100.0 34 ................................ CGAGAAATCGGGTTGTACACACTCGATCCTGATG 517 32 100.0 34 ................................ ACAATCCTATATGTAGCATCACGACCATTTCTAG 583 32 100.0 33 ................................ AGTAGCTACCTCTTCATCTGATTTTTCCTTTAT 648 32 100.0 34 ................................ ACTTGGACGGACAGACGTTATACTATGGCACAGC 714 32 100.0 35 ................................ AGTAAATATGCAAGTAAAGCTGGTGGTGGATATGC 781 32 100.0 36 ................................ GTTGTACCACACTTGTTAGTACAGCCAGATGATTTA 849 32 100.0 35 ................................ GTGTAACTCGCGTGACCTCCGCCATCTCCGATAAT 916 32 100.0 33 ................................ TGATAGTAGAACGTATTATTCCACGGAATGATA 981 32 100.0 35 ................................ ACTTATTGTTTCGTGAAATGTATCCGAGGATTGAA 1048 32 100.0 35 ................................ GATTTCGATGTGATTGAAAGCATGCCTGAAGACAT 1115 32 100.0 33 ................................ CTGATACAAAAATATTATTCAAAGATTTAATTG 1180 32 100.0 34 ................................ TGTCTTTTGCTTTTTACCATTAAAAGCAAATACT 1246 32 100.0 33 ................................ TATGAAATATGCTGGTTCAAAATTAAAAGAACG 1311 32 100.0 36 ................................ CATAGTTTTAGGAAGTTATTATAAATAGCTTTTCTC 1379 32 100.0 36 ................................ TGTATTATGTACAGAAAAATCATAATCGGGATGTGG 1447 32 100.0 35 ................................ TTTGATGATGAAGCAATTGAAATAGTGTAATAATT 1514 32 100.0 36 ................................ TATGTTTTCTTGGAAAGACTGGGAAGTTGAAGTGCC 1582 32 100.0 34 ................................ TTCAATCGTGGGAAACATAGCCAGTATTGAGAGT 1648 32 100.0 35 ................................ GCTAATTGCACATCCCAAGTCATTAACTCAACTCC 1715 32 100.0 35 ................................ AGCAAGGCGCTCAGAAGGTCCCTCTGTCCAGCATA 1782 32 100.0 33 ................................ TACAGATAGCCCCGTCCGTTCCCGTAGCGCTTG 1847 31 84.4 0 ..................T....T....GG.- | CC [1873] Deletion [1878] ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.4 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGAGTGCGTGGATTGAAATTGCTGGATGTACATATTTGAGTTACTCTGAGCTTTGG # Right flank : AGTTTCCAAACTTAACTCAGATTAATTCAAATGTGATGTTGTCAATATCTATGAGAAGATATTAAAATTAATAAATGGTATTTTTGGGGATTTTTAAAGGGGCATAAGGGTTCAATATTTACCCTAAATGAATAATTACAATAACAAAAGTTCGCTGACATCTATTTGTCAGTGAACTTTTGTTATTGTAGGGCTAAATAATAACAGGTAGCACCAGTCGCTTCTTAGGTACGTCGAATATAAATTTAGAAAGCTTCTCCCGACGAATAGTCTTTAAACTTAGCTATTGATATACGGTTTGACTTGTGGCAGTCTCATGGAATGATTGGTGTGTTTCACATGTGCAGGAGCTGAAACAAATGATACCAGGGATTATGGAAGCGTGAGGACATGAGTGGTTTATAGTTGTATTGAATTTCATGTGCGTTAGTTTATTATTTTTTGAATATATAAACTAACATACATGATCTTGACACGCTTTCTGGCGATAAGTACGAGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10819-12398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSFN01000026.1 Paenibacillus crassostreae strain LPB0068 PNBC_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 10819 33 100.0 35 ................................. GACTTACGATCTTGATACTAGTCTGCTTCCGTTTC 10887 33 100.0 33 ................................. ATTATGAGACCTCCAGTATAAAGTTATCCTCCA 10953 33 100.0 33 ................................. ATATAAAGTGTAAATGCACGACTATCATCTTTT 11019 33 100.0 36 ................................. GGTATGATATTGGACTTAATATTAGTGACTGGTGCA 11088 33 100.0 37 ................................. CCAAACAACCAACCCCAAGTGGAGACGCAGGAAAAGA 11158 33 100.0 34 ................................. ATCGCTTGCTCAACAGAATATTAATGTCGCAGTA 11225 33 100.0 34 ................................. CCAGAATTTTGCGGACGACTCATGCACCAATACC 11292 33 100.0 34 ................................. CACTACCACATTATAATTATTTCGTGCGGTAGGT 11359 33 100.0 33 ................................. TGATTTCTCTTTGTTCTTGTGCTTGTAATGAAA 11425 33 100.0 36 ................................. CCCTTGCGTGGGGCGTTTGAATTTGACGATTACACC 11494 33 100.0 34 ................................. TCCACTTCCGCAAGATGTGCTGTCTCTTGTAAAT 11561 33 100.0 35 ................................. TTTCCACTCTTAATATCAACCACACACCCGATATC 11629 33 100.0 34 ................................. TTCCTGGGTTTCTGTTACTAATTCTTCCTCTTCC 11696 33 100.0 37 ................................. TGTTAACGATTTTCACGCCAGGCATCACCTGCAGCAC 11766 33 100.0 34 ................................. AGGAATTGAACCTACATGTTTGTCCTCTATAAGC 11833 33 100.0 34 ................................. TTTGCGGGGGTTGTGTCAGGATTATTAAGATTCA 11900 33 100.0 34 ................................. ATTGTATATTGGTAAATATCAACAGGTGTATCAA 11967 33 100.0 33 ................................. CATATCTGTACTTCTGTTGCTCCTGTCGGTACA 12033 33 100.0 34 ................................. CCTTTGATCAAATGAAAGATCCGAATACGAACAG 12100 33 100.0 36 ................................. GAGCAATACGGAACTGGATCACACGACGATCTCCCG 12169 33 97.0 33 .................A............... GGTTGGCTCAGCAGGCGTGACTGGTTCAGGTTT 12235 33 100.0 33 ................................. TCTGAATCTTGATTATAGTAATCATCGCGGTAT 12301 33 100.0 34 ................................. TATATAAACGATGTGCCAGCTAAGGCTAAAGAAT 12368 31 87.9 0 ..........A...-T...-............. | ========== ====== ====== ====== ================================= ===================================== ================== 24 33 99.4 34 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : AGGAGATATTGATGCATACCCGCCATTTTTATGGAAGTAGGTGAACGGCCATTCTAGTATTGATTACGTATGATGTCAGCACGATATCCGATGGTGGAACAAGAAGACTGAGGGTAGTCGCTAAGAAATGTGAGGACTATGGGGTACGTGTACAAAATTCAGTCTTCGAATGCATTGTTGACGCAACACAATTAAAAAAGCTAGAAATAGAATTAGAAGAATTAATTGATCCAACGGTCGATAGTTTAAGGTTTTATATACTAGGAAATAACCATAAACGTAAGGTCAATCATATCGGCGCCAAGCCGAGCTTAGACGTTGAAGGACCATTGATTTTCTAGTGCGAACCATGAATTCCCTGGGGGGTTCGCACCAGAAAAGACCAAAAAATAGCCCTTATTTGGAAAATATTATAACTAAATGCAAAAGGTGAAAAGGTATACTCACTAATTTTTACTGTAAAACAGTTAAAAACCCACTTTTTCCATCACTTTTTCGCA # Right flank : TAGAACAACATGCAGGAAGATGCACGCAATATTAGTCGCACTCTATGTGAATACGTAGAAATTTAATTAATGCTAGTGGCACAGCTTAAAGCAAAGGAATTATCTAAACAGGATGAAGTAGCAAATTGCTGCTTCATCCTGTTTCCATTTAGCCGTTATAGAGTATAAGGTGAATCGTACCCTAAGTAACAGCATCTTTTGTGCAGTAATCGGCTTTCGAACAGGACCTTAGTCTGGTTTCGGGATTTTAAATGCATGGTATAATCAATTTTGTATTATTATTCCATTGATATAAAATTGTGTTAACAAGGAGATGGTGAAATGTATATGAAAAAAACAGCTACTTTCGTTCTCGCGCTGACTTTAGTGCTGGGAATCCCGTCAGTTGTATCAGCAGGTACTGAATTAGCGAAAGTATCGGGGACAGAAATTCAATCCCTCAATTCTCAAGAGATGGAAACATTCCTGGATCGCTTTTTTTCAAGTGATGCTGTTCAGAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 99385-106007 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSFN01000025.1 Paenibacillus crassostreae strain LPB0068 PNBC_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 99385 32 100.0 35 ................................ CGATGGTAGTGTCATTTTCACTACTCTAGGCTCTC 99452 32 100.0 34 ................................ CGTGGTCTTGGCATAGTTACACCCTTTACTAATT 99518 32 100.0 36 ................................ TTTCTCAAATTTATCTCTTTGATCCACTATTTTTGC 99586 32 100.0 33 ................................ TTAATAGCATCATTAATCATCTTGTCTAAGTCC 99651 32 100.0 34 ................................ GTCTTTCTCACCTCCCTTCTCGGTTATCGTTTAG 99717 32 100.0 33 ................................ TCCATAAAAAATACCCCCTTTTCCATAATAGAA 99782 32 100.0 33 ................................ GTTCAAGTATAGGCTGAAATGCCCTCAATGAAT 99847 32 100.0 34 ................................ TTGGTTCTGAAAGGTCGGCAGCAGGGTTTTACGT 99913 32 100.0 34 ................................ CCATCAACCAAGATGGGAGAACATCACACTCACG 99979 32 100.0 34 ................................ GAATACGTAGATTGCTTACACTTTTTCCTTTCAA 100045 32 100.0 33 ................................ GATGGTCAGTACTAAGTTAGGAGATACACTAGC 100110 32 100.0 33 ................................ TCCTCATGCTCTTCGGCACACCCACGCGGTACA 100175 32 100.0 34 ................................ TGCTTGCAACAATCCTTCAACCCATGTTGTGCCA 100241 32 100.0 33 ................................ ACATTGATCTACCATCTCAGTTGTTTTAGATTC 100306 32 100.0 34 ................................ TTGCTTGAGTGGATCGGTAACGAAATCAAGATTT 100372 32 100.0 34 ................................ AACAACGTTGGAGCAATCCAAGCCTCTTGAGTTT 100438 32 100.0 35 ................................ AGGATTAACCTTGTCTAATTGACCGCCACTCTTTG 100505 32 100.0 34 ................................ CGTGAACCGGTGATTTGTTGATTGTTTGAGCCGG 100571 32 100.0 35 ................................ TTTGTAACGCCTGATCTTTGTCCCTTTGTGATAAA 100638 32 100.0 35 ................................ ATATTGATATCCACCTAATTCAAAGTCATTGTTTG 100705 32 100.0 35 ................................ ACACAATCTTCATCACGTTTACTACACCATTGCTT 100772 32 100.0 33 ................................ TTCCAAGATCGGACACGATGTATCTATGAATGT 100837 32 100.0 37 ................................ TCCTTCACCTCGACTAATTCCAATTGAACACTGCTTA 100906 32 100.0 34 ................................ CATTACCTCCCTCAGATAAGCCATGCCGACCTCA 100972 32 100.0 35 ................................ CGTTTGGTCATTATCACAACGTCCATCTGGAATAT 101039 32 100.0 34 ................................ TTCATAGGTTAATTGTATTTGATTAGGGGTTTTA 101105 32 100.0 34 ................................ TCTCAACTACAGTTTAGGGAACAGTATTGGTGCT 101171 32 100.0 35 ................................ TTCAATACGTGTTACTCTGTCACGCACCTCATAGA 101238 32 100.0 34 ................................ ATTATTCTTGGGTCTATTACAAATTTAACTTTAG 101304 32 100.0 34 ................................ TCGTAAAGCTAAGTATTTAGAATTTAATAGTATT 101370 32 100.0 36 ................................ CACTATTAGAAGCGACACAAGTAGATTCTGACATGA 101438 32 100.0 35 ................................ GTAATCATAAAGGAACTATTGAAATTCGGGATGCT 101505 32 100.0 33 ................................ ATAATCTCAGCTGGATCCTTCCTTTTTCTTCCC 101570 32 100.0 36 ................................ GCTTTTAACTGTCATCAAACGTGCCTAGGTCGTGCT 101638 32 100.0 35 ................................ TGTAGCGCCTGCATCTCTCTAAGTGCCGTAGCGTC 101705 32 100.0 33 ................................ TCTCATTGAATTATTTAGATTCACTTTTATAGA 101770 32 100.0 33 ................................ TATCGACCTTTTGGGGCAGTGTGTCAGGTTTCC 101835 32 100.0 33 ................................ TTGTAACTTGGCTCCATCAAAGAATGCCTTTGG 101900 32 100.0 36 ................................ CTCATGATTGCTAGGTAACTTAATCTGACCATCTTT 101968 32 100.0 36 ................................ CCCTTTACACTAGAATCAATCACTTTAAGCATACAA 102036 32 100.0 36 ................................ TCTTCCTGATCGCTCTCCGTCGGATCAGGAGTAAAT 102104 32 100.0 33 ................................ CTCCTGGCTTCATCGTGAATTTTCTCTAACTCT 102169 32 100.0 33 ................................ CGAATATCGACATTAGCCTTGCCACCTCTTCCT 102234 32 100.0 35 ................................ ATTTTAATTCCACCTCCCCTACTTTGGAATTGGTA 102301 32 100.0 35 ................................ TTTAACATTGCTAGATAAGTAAACGTAGCGCGATT 102368 32 100.0 35 ................................ TTGTTTAGTGATATGCCAAGTCCTGCAAATGTTTG 102435 32 100.0 38 ................................ AATTGTACTAAATATTTCACCGCTTGCTGTACTATAAA 102505 32 100.0 33 ................................ TGATTATGTATCATTTACTAATCAATTAAATCA 102570 32 100.0 35 ................................ TGCTTCATATGGAATTATTGGAAAATCCTCAATGC 102637 32 100.0 34 ................................ TTAATAGTTAGGGGGCTATTTTATTTTTGAAAAT 102703 32 100.0 36 ................................ CTCAATCGGAATCGGCTCTTCATTCATCGTCCTTAA 102771 32 100.0 34 ................................ GCCTTATGCGCTACGCAAGCTATTTTGTCATATA 102837 32 100.0 34 ................................ TGTATAAGCAGGGTGCCCCTGCACTGCCTATTCT 102903 32 100.0 36 ................................ CTTTGCGGAAAATGTGGATCGCCAAGATTACTTGAA 102971 32 100.0 36 ................................ TGTATTTCTCGTCCAGTTCAAAACAGCTTGTTTATT 103039 32 100.0 34 ................................ TCCTAAAACATTGCTACCAATCACAGCAGTCGTT 103105 32 100.0 36 ................................ TTTTGGGCTAATAATCCTTTGGCAGACTGTAAAATT 103173 32 100.0 34 ................................ CGATTGACCGTAGCAGGGCAAACCTTTTCAGCAT 103239 32 100.0 36 ................................ AACCAATACTTTAACTTTTGAACTTAGTCTAACTGT 103307 32 100.0 36 ................................ ATTTAACACTGGTATGTTTTGCGATATGCTAACTTG 103375 32 96.9 35 ...................A............ CATTTCATACTCCACACCTGAACCCCCTTATTTTT 103442 32 100.0 36 ................................ CACTGAATGTCCCGCGGCTATTTGCCGACCGACCTG 103510 32 100.0 35 ................................ TATAAGATTGGTAGTCCAACCCTTAACCTTATCCC 103577 32 100.0 36 ................................ CACAAAGTAGCTCACGTTGTCGCTCAATCCAAGGTA 103645 32 100.0 34 ................................ GCGTACTCCTCTAATAGATCGATAACTTGTAACC 103711 32 100.0 35 ................................ CGGTAGCATCCGGAGCCAAGGAAACGAAGGATGAC 103778 32 100.0 35 ................................ CCGCAGGTACGTTAATTAACGCAGTCATCGCGAAC 103845 32 100.0 36 ................................ ATCATGAATGCCACAATGAGATACATGGGCGCTTTG 103913 32 100.0 35 ................................ TTGTCCACGTAGATATGTTACTTCGACTGTATCCG 103980 32 100.0 33 ................................ AGTTCCATCCCGAGCGCAATAGGAAATGTTCAT 104045 32 100.0 35 ................................ CTAAATCCATAGGTAACATTAAAGCCAATGGAACA 104112 32 100.0 35 ................................ ATCTAGATGTAAACGGAAAATATTCTCGTAAAGCT 104179 32 100.0 34 ................................ ATGATGTTTGATGCAATGAACAACGTTAATGATA 104245 32 100.0 35 ................................ TCCCATTGCTTGCTGTAGAGCTTGTCTTTCTTTTG 104312 32 100.0 34 ................................ CAAAATAGGACTTGTAACAGGTGATTTTACAGGC 104378 32 100.0 35 ................................ AGCTAGTGATAATGCGCTGAAATATGCAATTGTAG 104445 32 100.0 36 ................................ ACCAGTATCACCTTTATCACCTTTTATTCCAGTACC 104513 32 100.0 34 ................................ AAAGCCGCTGCTGCTGGAATGGATAATTGGGGTA 104579 32 100.0 34 ................................ CCGAACTCGTAAACCATGGTTACACCGTAAAATC 104645 32 100.0 35 ................................ GGTGGGGGTTTAACGCAATCAGAAGAAACAAGCCC 104712 32 100.0 34 ................................ ATATTCAGGAATCTATAATTTTCATTCTCTATTG 104778 32 100.0 35 ................................ CGATTGAAGATAAACGGTGTTGGTAAGGTAAAAAT 104845 32 100.0 35 ................................ CGAATTTATCAACGCCCGTGACTTTAAATGTATAC 104912 32 100.0 34 ................................ TATAAAAATAAACGAATGCACCGACTAATGCAGA 104978 32 100.0 34 ................................ GACTTATCTAGTACCTCGTTTTCGGGGTCCATGC 105044 32 100.0 34 ................................ CAAAGCTGAATACCAAGAGTTGAAATCAGATCCG 105110 32 100.0 34 ................................ ATTGATGTACTTACATTAGTTACTGTTAAATAAC 105176 32 100.0 35 ................................ TGCTTCATATGGAATTATTGGAAAATCCTCAATGC 105243 32 100.0 34 ................................ ATTTCTTCAATTATTTTTATCATTTTAGGATTAA 105309 32 100.0 36 ................................ TATTATTGATGTCTGGTTAGCTTTCCACGTATTTAA 105377 32 100.0 35 ................................ AATATCCGAGTTACCAGCTGGCAATCTATCCAATT 105444 32 100.0 35 ................................ TTTTGTTTTAGCTAATGATAATAGTAAACTATTTG 105511 32 100.0 34 ................................ AAAATCATCACGTTTCGGACGACTCTCTTTATTT 105577 32 100.0 34 ................................ TCCACCTTCTTTTCATTCTTATTATTTAATAAAC 105643 32 100.0 34 ................................ CTCAACGCTCAGACGGCTGTCGTCTGTAATACGT 105709 32 100.0 34 ................................ GCTGATATTCGCCATTTACAACGTCCCCTTTCGA 105775 32 100.0 36 ................................ ACCTTGTCTCTTAGTGTGAATTTTTCCAGTGGGTAA 105843 32 100.0 34 ................................ TACTTTGGCTAATGCAGTAATTTTGATCATGAAT 105909 32 100.0 35 ................................ ATTAGGGTTTTTAACATGAAATGAAATATAGTTTT 105976 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 100 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTGATTATGTAGGGGACGGGGATTCTGAGGAATCCCTGTTTTTTTTGGTGGGAAGTCAAATGTAAGTGGGATTGTCACGAATCGTTATAAAGAAATTCAGAGTATAATTCAAGCTTTTCCTTGTGAGAAATATATGGTAGTAAATTAATAGTATTGGCTTCTAATATATAGGAATCACATGTCTCAAGAGATTCGGTTGGCTATCTCTTTCAAATAATCATTACCTTATTTAGATAATTGTTATAAAATATTAGAAACAATGATAAATATAAGTTTCAAGACCTTGGAGAAAAGTGAAGTTAAATATCATTGGAGGCATTTGATTTTCTAGTGCGAACCAGAAGCACACATGAAATTCCTAGGAGGTTCGCACCTGAAAAAGTCAATAACCAGCCCATATTTGGTAAATATTATAATTAAAGACGAAAAGAAAAAGGGTAGATTCACTTGTTTTTACAGTAAAATAGTAAAAAACTTACTTCTTTGATCATCTTTTCGGA # Right flank : TTATTAATCGTGGAATACATGCAAAAATAATATCGTCGCACTCTATATGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //