Array 1 44756-46736 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYQ01000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2988 BCW_8425_1__paired__contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44756 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44817 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 44878 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 44939 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 45000 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 45061 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45122 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45183 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 45244 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45305 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45366 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45427 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45488 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45549 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45610 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45671 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45732 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45793 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45854 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45915 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45976 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46037 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46098 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46159 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46221 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46282 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46343 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46404 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46465 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46526 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46587 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46648 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46709 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62869-64284 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYQ01000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2988 BCW_8425_1__paired__contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62869 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62930 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62991 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 63053 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63114 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63175 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63236 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63297 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63358 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63419 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63480 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63541 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63602 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63663 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63724 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63786 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63889 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63950 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64011 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64072 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64133 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64194 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64255 29 96.6 0 A............................ | A [64281] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //