Array 1 32997-31086 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNY01000020.1 Streptococcus mitis strain BCC60 D8847_contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 32996 36 100.0 30 .................................... TTTAATGACCGCCTTTTTGATAGGCTTTAC 32930 36 100.0 30 .................................... AACTCACTAAAAAAGCTTACGCAGGTATTT 32864 36 100.0 30 .................................... CCGAGAAGTTCCGTAACTTCATTGACAACT 32798 36 100.0 30 .................................... CCGAAATTAAGGTTCACGGATTTGGAGTAA 32732 36 100.0 30 .................................... ATACTGATGGATCGCATGAGACTGGCTATT 32666 36 100.0 30 .................................... AGCTATCAACTGTTTGACACTTTGGACGCT 32600 36 100.0 30 .................................... CAAATCACCAACGGCGCGAATTTTATTAGC 32534 36 100.0 30 .................................... ATCAATTAAGTGAATGGATTCAATAGGCTT 32468 36 100.0 30 .................................... GGCTCTATCCGTAGTGAAATACATGACGGT 32402 36 100.0 30 .................................... ACCTAATACGGCTTGGAAGTATAACTCCCA 32336 36 100.0 30 .................................... TGGAACAAAGCGATAATAGCAATGGACTCA 32270 36 100.0 30 .................................... TGGCAAAATGTTCGAAGAGGACTTCAAAAA 32204 36 100.0 30 .................................... TCGAGTGCCTTTATTTTTAATTTCTTGAAC 32138 36 100.0 30 .................................... TATCTTTCGTTCCCTCATTGCCGTTCATTT 32072 36 100.0 30 .................................... ATCTTTCAGTCGGTAACGCAAACGCCTATG 32006 36 100.0 30 .................................... CACTCCAAGTTCACAATAACGAATAACTGT 31940 36 100.0 30 .................................... AATCTTTTGATAAGTTTAATAATTTAAGAT 31874 36 100.0 30 .................................... CTATTGTTTAGAGCCAAACCAAGTAGAAGA 31808 36 100.0 0 .................................... - Deletion [31773] 31772 27 72.2 30 ---------.C......................... TAACTTCTTTGTTATTGATATCGACAAACA 31715 36 100.0 30 .................................... AATGTCTTGTTGCTGACATCAGGGTAAACC 31649 36 100.0 30 .................................... TTCATGTTTTGAGTGATTAGAAGCTCCTAT 31583 36 100.0 30 .................................... TCTCTATAAGAACCATATCAAGCCAAAGTT 31517 36 100.0 30 .................................... TACCAACGTTAGCAAAGTTACCTTGCACAA 31451 36 100.0 30 .................................... AGCAAGCTGCCTTCCTGCACGGTGTAGACT 31385 36 100.0 30 .................................... TAAAAATATTTTTTACTTTTTAGAATTTAT 31319 36 100.0 30 .................................... TTGAAGAAGTAATTCAAGATATTGGAAAGG 31253 36 100.0 30 .................................... ATGCTTGAAAGTGACGAAGCTGTTATCTCA 31187 36 100.0 30 .................................... TATGAAAACAAAGAACGAAAAGACCGATTA 31121 36 91.7 0 .................................TCT | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 98.8 29 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGATAAACCAGAAGTCAAATCCATGATTGAAAAGTTGGTAGCCACGATTACAGAATTATTGGCATTTGAGTGTTTAGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTAGAAACCTTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCAAAAAAGAAACTCCTTGTTTTCATCAATGCATCTGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTAAAAGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTCCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGATCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTAAGAAAAATTTTTCTACGAG # Right flank : ACATAAAAAGCTACTCAAAAAATGAGTAGCTTTTTAACTATTCCCCCTTCCCTTACACATAGCTCATTCCCTTATAGAAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCTCCGATTCGCTGGCTGGTACTGTACATTCTTCTCTCCCATTTGACTGGAAAGATAACTGCTAGAAAGGCACCTCCTACTGCACCTCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCGATAATATTAATCACAAAAAGTGTCAGATAGGATTGCCCCAACTGCTGAATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTAAAGAGAAGTGGAAGCGCCTGCTGCTACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAAAGAAGGAAAAATTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //