Array 1 480791-482148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046134.1 Streptococcus thermophilus strain MAG_rmk202_sterm chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 480791 36 100.0 31 .................................... CAAATTTGTCAAAATCAAAGTTAATTTTTCC 480858 36 100.0 30 .................................... GATTCAGTGGATGCGTATTACCGAGGAGGT 480924 36 100.0 30 .................................... CCATCTTAACGAGAACATTGGAGAGTTAAA 480990 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 481056 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 481122 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 481188 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 481254 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 481320 36 100.0 29 .................................... ATGGCCTATGCTTAATAAAATATCTTAAA 481385 36 100.0 30 .................................... GCTATACCCTAATATAGCTGAACACGTCAA 481451 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCACAAAGT 481517 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 481583 36 100.0 30 .................................... TCATAGAGTGGAAAACTAGAAACAGATTCA 481649 36 100.0 30 .................................... AAGTCGTGTCAGAAAGATTGCTGACCGTTT 481715 36 100.0 30 .................................... AGATAAATTGCCAGACATGAGACGTTATTT 481781 36 100.0 32 .................................... GTATCTAAGCGTGCCCGTGGTTTCACAGCTTT 481849 36 100.0 30 .................................... TGATTTTATATACCGAAAAGACTACGTCTT 481915 36 100.0 30 .................................... CACTTTCTTTATCACGACCTAGATTATCTT 481981 36 100.0 30 .................................... TCAAAGCCTTGTCTGATCACACGAAAAAGA 482047 36 100.0 30 .................................... CCATTTCTATGGAGTTTACGGTGACGTCGT 482113 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CATTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 958175-957048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046134.1 Streptococcus thermophilus strain MAG_rmk202_sterm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 958174 36 100.0 36 .................................... GCTATCTGGATTTTCTTCCTTGAATTTTTCAAACCA 958102 36 100.0 39 .................................... ACTTACATATTCCAAAATTAGCTCTTTGATGTCATTATT 958027 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 957956 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 957883 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 957810 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 957735 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 957661 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 957589 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 957517 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 957447 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 957371 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 957300 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 957227 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 957153 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 957083 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 97.9 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1199422-1197210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046134.1 Streptococcus thermophilus strain MAG_rmk202_sterm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1199421 36 100.0 30 .................................... CTAGGCAATCTTGAATATAACGATATCAAG 1199355 36 100.0 30 .................................... GGAAAGGTAGTGATGGACGAGATGGTATTC 1199289 36 100.0 30 .................................... ATAATCACGATGACATCATAGGAGGGATTG 1199223 36 100.0 30 .................................... TCCTTTTTTGAAACGGTAAACTCAAACGTA 1199157 36 100.0 30 .................................... GATATCTATGTGGAACTTATAACCGCTAAG 1199091 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 1199026 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 1198960 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 1198894 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 1198828 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 1198762 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 1198696 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 1198630 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 1198564 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 1198498 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 1198432 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 1198366 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 1198300 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 1198234 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 1198168 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 1198102 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 1198036 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 1197971 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 1197905 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 1197840 36 100.0 29 .................................... TAATTTCAATATCTTTGAACACTATCAGG 1197775 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 1197709 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 1197642 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 1197576 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 1197509 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 1197443 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 1197377 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 1197311 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 1197245 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //