Array 1 502199-501438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGN010000007.1 Nonomuraea montanisoli strain SMC 257 NODE_7_length_551020_cov_15.5127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 502198 30 96.7 31 .............................A TCATGGAAGAGTCCCCCTGGAGGGCGAAGCT 502137 30 96.7 31 .............................T CGACGTCGTCGCCGCTCATGGCGACCGGCAC 502076 30 96.7 31 .............................A GGCCCGGGTTCGGCCAACTCCGGATAGGAGA 502015 30 100.0 31 .............................. CAGGCGCCTAGCTCGTGAGCGAAATAGTCGG 501954 30 100.0 31 .............................. ACACCGCCCAGGTGCTGCTGTCCGGCACGGA 501893 30 96.7 31 .............................A AGGTCGGCTGGAAGTTCAGCCCGGTCGAGTG 501832 30 96.7 31 .............................C CGACGATGCCCAGGGCCTCCGCGGCCTCCGA 501771 30 100.0 31 .............................. TAGGCCGGGCCGACGGCGCGCGTCCACTCGG 501710 30 96.7 31 .............................T CGCCGGCGGCGCGGTGCTCGTCGGTCTCCAC 501649 30 100.0 31 .............................. AGATCGCCCGCCGCGGACTCGCCCGCGAGGA 501588 30 96.7 31 .............................C CGGGCGGCTCGCCGTACGTGTACGCGCTGCC 501527 29 93.3 31 ..............-..............C GCCACCTCATGCACGCAGACCTCTGGAGCCG 501467 30 93.3 0 ..........................TT.. | ========== ====== ====== ====== ============================== =============================== ================== 13 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCTTCCCGCGCTACCACGACTGCTTCGCTCTCCAAAGTATGCTGAGCCCTCCGGGGGCTCAGCATCCTGTGCGCGCCAGAGGACAATCTTCGCCGAGCGTTCCTAGAAGTTGTCTTCCTGGCCGACCAACACGCTTCCGGTCTCCACGGTGTAGCAGTCGCATGAGCCGCATCCGGGAATCATCCAGCCTCCTTGCGTAGGGGTTGGCAACACCTTATGACTCGACCCCAGTACTCCCCCGTGGCCTATGAGGGAGAATGCTGTTTTCAGCTCCGTGGGGCGTGTTAGTCGAGAGCCATGGGCCGAGAGCACGACCCGACGAGGCTGTCCCCTGAGTGCCTGCCCCAAGGAGTCCGCCGGACATACCCTGTCCTAGCCTCCTTGGCACCGATACATAAACTGCTTTCACAGCAACCTGAGGCCCGCAGCCCAAAATGTCCGTTTCTCCAAAAGTGCTCAGAACGGAAGTCTGCCGGTTAGATCGCCGCAGGTCAGGAAGA # Right flank : CGCTGTGGCATCCCAAGATCTGGGATGCCACAGCGCCCTCAAACTTAGCCGCGTATTAGCCGCGGATGGCCGTAGCCCGCCGTAGATGACCATGGACAGCCGGACACAACGAGAGAGGCCCTTCACCGCGTTTCCGCTGGTGAAGGGCCTCTTTCTGCTGGTGTGGCAGGTGCAAGGTTCGAACTTGCGTAGGCTGAGCCGACGGTTTTACAGACCGCTCCCTTTGGCCACTCGGGCAACCTGCCGTGTCTTCCGCTCTCGCGGCGACAGACAGAAGAATAGCGGACTTCCGGGGTGCACGTGACACCGGTTTGTGCCGCCCCGGGATCACGGCCGTACCTGTGCCGGATGGTGGCAGGGTGGAGGGGTACGGGCCTGGTGGACTGCACTACGGGCCGATGCTGGCTAGGCTCGTGCGCTGGGTCCGTGTTCACGGGGGCGCGATGCGTGGTCGGCGAGCCCGGAGGCCGGGCCGGACACCGCAGACATGCGTTCGCAGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503854-502733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGN010000007.1 Nonomuraea montanisoli strain SMC 257 NODE_7_length_551020_cov_15.5127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503853 29 100.0 32 ............................. TCTACCAGCGAGGTGCCAGGAATGTGTATTAG 503792 29 100.0 32 ............................. GACCCCGACTCAGCCGACATCGCCGCCCGCGA 503731 29 100.0 32 ............................. GACCCGGAGCTGTTCTTCCCCTACGGCTACAG 503670 29 100.0 32 ............................. TGCTCGACGACCACCCGGCCGCGCGGTGGTGG 503609 29 100.0 32 ............................. GCACGGCGGACAGTTCCAGGTCGTCCAGGTAG 503548 29 100.0 32 ............................. GACTGAGCGCTGTACCCAGTGGCGCGGAGGAT 503487 29 100.0 32 ............................. CCGGTCGCCGACGAGCTGAACTGGCAGGTCGA 503426 29 100.0 32 ............................. AGGCCGCGTGATGGATATCGCGACGTGCCAGT 503365 29 100.0 32 ............................. GGCGTCCAGGTCGAGGTCCCCAAGCCCCCCGT 503304 29 96.6 32 ...........................G. TGCACCGAGCCCGGGTGGAGGAGGATGTCGTC 503243 29 100.0 32 ............................. AGGCCGCGTGATGGATATCGCGACGTGCCAGT 503182 29 100.0 32 ............................. GGCGTCCAGGTCGAGGTCCCCAAGCCCCCCGT 503121 29 96.6 32 ...........................G. TGCACCGAGCCCGGGTGGAGGAGGATGTCGTC 503060 29 100.0 32 ............................. AGGCCGCGTGATGGATATCGCGACGTGCCAGT 502999 29 100.0 32 ............................. GGCATCCAGCTCACGCAGGCGTGGTACCCGCT 502938 29 96.6 32 ...............A............. TACCACATCTACAACCTCTACCTGCTGATGTC 502877 29 96.6 32 .................A........... GCGGCACTTCCCTACGCGGTGCTCTACCCGGA 502816 29 89.7 27 ...............A........A...T CTGTGGAGCCAGGAGCGATGGAAGCGG 502760 28 82.8 0 .............A..T....-..A...T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.8 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CACATGGGCGCAACGCGACATGAAGCATCAAAACTACATCTAATGCCCAAATCGGCTTTCACTACAGAATGAGGCAGATGAAGATCGCTTTGTATGTCCGCCGATTGCCCTAAACGCCGGCGCTTTCTTCAGCGTTACCAGTTACAGCGATCTCATCAGAAGCCTTTGAGGGACTGAGCAACAGGAGGCTTCGCGATGCGACCGAGCGCGCCAAGCTGAGGCGTTGTGTGCTCCGCAAGAGCACACCTGATCTACGACAAACGGGATCCGGAACGGGATGGCCGCCATAGAGATGTCCGCCAGAGGTCCGGTCTCGTTCGCGACCAGAGTCAGCCTAGGACGGAATCATCGATGAGTCCGGCCTGACCCGACTAAGCCCATAGAGTCGCAGGAAGACGACCGCTCCAACGGCTAAGCGAAGGCTTCTGCCCTGAATGTCCAAGTCTCCGAAACTGCTTCAAGGTGACGTCCGCCGCACACATCACTGCAGGTGAGGAAGA # Right flank : TTGACAGTGGACCGTCGAGGCGTCTTCGGCCCCCGCTTCCCGCGCTACCACGACTGCTTCGCTCTCCAAAGTATGCTGAGCCCTCCGGGGGCTCAGCATCCTGTGCGCGCCAGAGGACAATCTTCGCCGAGCGTTCCTAGAAGTTGTCTTCCTGGCCGACCAACACGCTTCCGGTCTCCACGGTGTAGCAGTCGCATGAGCCGCATCCGGGAATCATCCAGCCTCCTTGCGTAGGGGTTGGCAACACCTTATGACTCGACCCCAGTACTCCCCCGTGGCCTATGAGGGAGAATGCTGTTTTCAGCTCCGTGGGGCGTGTTAGTCGAGAGCCATGGGCCGAGAGCACGACCCGACGAGGCTGTCCCCTGAGTGCCTGCCCCAAGGAGTCCGCCGGACATACCCTGTCCTAGCCTCCTTGGCACCGATACATAAACTGCTTTCACAGCAACCTGAGGCCCGCAGCCCAAAATGTCCGTTTCTCCAAAAGTGCTCAGAACGGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 519530-517856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGN010000007.1 Nonomuraea montanisoli strain SMC 257 NODE_7_length_551020_cov_15.5127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 519529 30 100.0 29 .............................. ACTGGCGCGCGCTGTTCCGGTACGAAGCC 519470 30 100.0 31 .............................. GCGCGCTCGTCCCCGTGCCCGGCATGGATCC 519409 30 100.0 31 .............................. GCGGCTGATCCCGTGGCCGCCCTGGCCGTCA 519348 30 93.3 31 ........A....................A CGGCCCGGACTGCACGAGCAGTGGAGACCCG 519287 30 96.7 31 .............................T CAACCACGAGATGACCGCCGAGCCGAACGGA 519226 30 100.0 31 .............................. CTGCCAAGCGAATCAGGGATGCTGAGGACCG 519165 30 100.0 31 .............................. ACACGGAGCAGTTGGCCGTCATGCAGGCGGC 519104 30 100.0 31 .............................. GGAAGCCGCCGGCCAGGTCGGACCACTCCAG 519043 30 100.0 30 .............................. CCGGACGGGCCACCCCACAACCGAACAGGG 518983 30 96.7 31 .............................T GTGCCAGCCGCAGCCTGTCTCCGCTGAAGGT 518922 30 96.7 31 .............................C TGTACATTTCGTCCGAGTAGACAAAATGGCC 518861 30 96.7 31 .............................C CCTTCGGTCCCTCCTCAGGGACCCCCGCGCG 518800 30 96.7 31 .............................A TCTCGGCCCAGACCGGGCCGAGCAGCCGCTT 518739 30 100.0 31 .............................. TCGGCGACCACTGCCAGAGGTGTGACGTCGC 518678 30 100.0 31 .............................. AGCTGGGGCACTGGGGTGAGCAGGTCTGCGC 518617 30 96.7 31 .............................C GCTACCCGGACTTCCAGGCGCGGTCGCTGGA 518556 30 93.3 31 .........................G...T ACGCACCGGGCAACGAACGACCTTGTCACTG 518495 30 96.7 31 .............................C TGTCTCATCCTCATTGGTTGGTTAGCGAAGG 518434 30 100.0 31 .............................. AGCTGGGGCACTGGGGTGAGCAGGTCTGCGC 518373 30 96.7 31 .............................C AGCACCGGGTCCTTGGTCAGATACGTAGGAG 518312 30 96.7 31 .............................T TGCTCTCGATCAGCCATGGGCGGGCGAATTT 518251 30 96.7 31 .............................C ACCGCAAGTGACGGCCGCCACGGGACCACGG 518190 30 93.3 31 ..........T..................C GCTACGCCGCGGACATGGCGCTTCTCAAGGC 518129 30 96.7 31 ............................T. GCACGTGCGAACCGCCGTAAACGCCCCGCAA 518068 30 90.0 31 .C........T..........T........ ACACATACCACCGATGTCATCATCTCAAAGT 518007 30 96.7 31 .............................T CCTCAGGGGTCTTGGCGTTGCGGACCATCTC 517946 30 100.0 31 .............................. CCACCGTCCCCACCGGCTCGCTGTGCTCGTC 517885 30 90.0 0 .............C..........A....C | ========== ====== ====== ====== ============================== =============================== ================== 28 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCCAGATAGCCAGGCGCCGCCCGTCATCTAGACCACCCGGCAGTGCCTCCGCGATCACACGCTGCACCTGAGATGGCAACCAGCGATCCCAAAGGAGCCCCGCCACCGCGCCGCTGTCAGGCAGGTGCCGCCACAATGGCAACCATCCGTCAGTGGCGGCATCGTGTTTCGCCCACACCGTACGCGCAGCAGCCGAGAGGCCCCCAATCGACCAGCGCGGGAAGAGCTCCCCATCGAGCATGGCCACCATTAAAGACCACTACCACCGAAGACGCAGGAACCACGGGATTCATTTCCATAACGCCCTTGCGGAGGTTTTCAGCGTTACACAAAATGCTTCCTGTCTGAAATAAATACATATGACCGCATCGATGGTGCCGATGGCGACCAATGTCTACAGATAGATTCGACGACAGATGGGATTGGAGTGACATATGTCCGAATCTTTGAAAGTGCTTCGAATCGGCACTTCACCTGGGTAACGTCCCAGGTCAGGCAGT # Right flank : AGTCCGCCAGCACTGCTCCGCTTTAAGGAGGTGTTCCCGCGGGGATGGTCCCGACCGCACCAACCTGGACCGGATCAACCCAGTTGGCAATGACGAACAGGCCGCAGAATGCACGTTATCCGCAGGATGCCCTCCATAGAGGAGACACAGCAAGTCAGCAGGCCGCCCTGAAACCCGCGACAGGGCAACCGCAGAATCCCGCAGTTCCACGCAGAATGCCGTAGCCGCTTTCAGGTCATTCGTCGGGCGAGGAGTGGTTGAAGACCAACTCGACGCGATCTCCGCGCAGTATCCTGCGATGCTTACGCGGGCCTGGCATGACCTCGAAGACCGGCACCCCCTCAGGGACTCCCCCGAACTCGCGCAGTTCCTCCGACGTGGCCAGGTCTCGCCGTTCCTCCGGTGTAGGCATGCGCGTCACCACTCGCGCGCCCGCCGGCACTTCGTACGGCTCCCGGTCCGGCTCACCGACCACGAGCGATCCCCGCTTGCGCACTGTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 527759-528521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWGN010000007.1 Nonomuraea montanisoli strain SMC 257 NODE_7_length_551020_cov_15.5127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 527759 30 100.0 31 .............................. TGCCGGCGGGCAGCATCACGCCTGACGAGCT 527820 30 96.7 31 .............................T CCCACCGAGGGAGTTCACAAACTTGCCAATG 527881 30 100.0 31 .............................. GCCGCTTCACCAGCGCATGCTCGGCCGGCCG 527942 30 96.7 31 .............................C TGATCAAGAACATGCGGGACGCCATGCCCAA 528003 30 96.7 32 .............................A TTCCAGCCCTGAGCTACGCCTATCGGGAAGCG 528065 30 96.7 31 .............................T CGTGCAGAGCGTGGCCGGCGCCCAGCTCCTC 528126 30 100.0 31 .............................. GCACCTGGTAGACCCGCCCCGGCCGCCGGAC 528187 30 96.7 31 .............................T CTAATCAGATCGTGACGTAGCCTGGCAAGCC 528248 30 96.7 31 .............................C AATGATGAACCGGCTTCGCCTCTACTGGAGG 528309 30 93.3 31 ........T....................C CTCCCGAGGACCCGGCAGTACGCGAGCGGAT 528370 30 100.0 31 .............................. GCTGGACGCTGACCGGCGGCACGGGCTCGAC 528431 30 93.3 31 ............T................C GAGACCCGATGTCCAGCCACATCGTGGCACC 528492 30 90.0 0 ..............T.............AA | ========== ====== ====== ====== ============================== ================================ ================== 13 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AAGGTCACTGCGCACGTCACGCAACGCCATCAGATCGACTGGCTCTTGAAGCACCAGGAGAAGGCCGGGTTCAAGATCATTGAGAAGTCGGCCGACCAGCAACTCGTGCCCGGCCTCGACCGGCATGAGGTCGTCGTGCACGACCGGCGCCAACTGTCCTTCGCCAAACGCGGCCAGAAGGCCCCGGTCACCCTTCTCGCGGTCACCTTCGACGGGAGGTTGGAGGTGACCGACCCGGACGCGCTTCGGCACGCTCTCACTCGTGGGCTCGGGCGCGCCAAGTCGTACGGTTGCGGCCTCATGACGCTGGCCGAGGTGTGAACCGTGGCCACCGTCGGCCAGCGTGGCATGTCGTCGCCGCGCGAGCTCACCCGAATGGGAGACCGCATCTCGTTCATCTACCTTGAGCGATGCATCCTGCACCGGGAAGACAACGCCATCACGGCCGAGGACGCTGAAGGTGTCACCCACATACCCGCCGCCACCATCGGAACCCTGCC # Right flank : AAAGGCCCGCGCCGATTGGGGAGAAAGCAGTCGTTCAGGAGTGTCCACGGCTAATACGCGGCCAAATGTGGGGCGTGATCGGAGTTTCCCCAGGTCGGCGCAAGATTGTGACGGGTCTGTAAAACCGTCGGCTCAGCCTACGCAAGTTCGAACCTTGCACCTGCCACCAGCAGTAGCTGCAGGTCAGAGGCCCTTCGGGGCCTCTTCTGCGTTTCAGGGGTGTGCAGCCGTAGGCAGCCCTGAGCGGCCGTCTGTCGCTGGTCCCGGAATATATGCGGAATGGATCAAGGGGCGTTTCCTCTGGTCGACGCGCATGATCCGGAACGTCCACGGCCAATACGCGGCCAAGAAGAAGGGCCCCGGAGGCGATCCGGAGCCCTGTGCTTCTACCAGGCGAGGTCATCTCAGGCGACGAGCGCGTCTTGGATCCGCTGGTTAACGATCTCTTCTTGGCCGTCGACGCACTTGGCGTAGACGCGCAGCAGGACGTCGACGCCGTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //