Array 1 92048-90437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGRP010000002.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_2_length_135763_cov_114.118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 92047 30 100.0 36 .............................. AAGAAATTCTCTCAATGCTATTGGCAGGGTTGAGCG 91981 30 100.0 36 .............................. TGGCAATACCGACCTTCATCATCGCCCCGCCGACCG 91915 30 100.0 37 .............................. TGGAAAAGCCGATGTGGCCGGCAATGTAACGATTTTC 91848 30 100.0 36 .............................. TAACAATACCCCTTTAAATTTGACTTATAAAATATT 91782 30 100.0 35 .............................. CACTACCATCGGCCTCAGCAACAGATTGTATATGG 91717 30 100.0 36 .............................. ATAGCCGGACCCTTGATCCTCCCGGCGCATAGCACC 91651 30 100.0 36 .............................. ACATGGTCAAAGTATTTAGTGTCTTGCGATATCCTA 91585 30 100.0 37 .............................. ATTTGAAGATTCACAGCTCACAAAGCTTCCAAATCAC 91518 30 100.0 36 .............................. AAGTTTAAGCTTCTATTGCAGCTATCTGCAAAGGCT 91452 30 100.0 36 .............................. AATGAAGGAATTATCCTTGTGATAGGCATAGACCAC 91386 30 100.0 36 .............................. TTTAACAAAGCTAAAAACAAAACAGTTCATGTTGAA 91320 30 100.0 35 .............................. AACACATAGCCTTGGGGTATTGACAGTGCAGCAAG 91255 30 100.0 35 .............................. AACACATAGCCTTGGGGTATTGACAGTGCAGCAAG 91190 30 100.0 36 .............................. CCGTCGCGCTCGGCCTTATTGGTGTAACAGCGCAAA 91124 30 100.0 36 .............................. AAAGGTTTCGAAAAACAGTTCGAATCCATGCTGACA 91058 30 100.0 36 .............................. AAGGAATGTTTGTTGTTTTCGAAGCTTCAAAAGTGA 90992 30 100.0 36 .............................. ATGGCATGGTGATTGGTGATAAAATGGCTGAATATT 90926 30 100.0 35 .............................. TTGGCAAAGACAAAAGGAACAGAAGGGCGAACACA 90861 30 100.0 35 .............................. ATTGCCGCAGACCCGGTATCTCCATCTGATCCATA 90796 30 100.0 36 .............................. ACCGGAGAATTTTCGGTCAACGCAGGAGAATTATAA 90730 30 100.0 36 .............................. TGTTTTAGCCGAAATTATGGGGCATACAAACACAAA 90664 30 100.0 36 .............................. AGAGTTAACTTTAAATTTTGGAGACAACAACAATGA 90598 30 100.0 36 .............................. GGGGGATACGCTTGCTTTGTGGTAGGTGAGGTTAGG 90532 30 100.0 36 .............................. TCAGATTCTATAACATTCTGTTCAGTGCGCTTTGGA 90466 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 CTTTTAATCAGACCAACGTGGAATTGAAAC # Left flank : CTTAATTCGCCTGGATTGTTACAAGCTGGTCAAGCACATTATTGGAGAAGCCAAGTACTCGGGCTTTAAAATGTGGTGGTAATATGTACATCATAGCCGTATATGATATCAATACCGAAACCCGTGAAGGCCGCCGAGCCCTCAATAAGATTTTCAAGCTGATGAAAAAATATCTTATTCATATACAAAAATCGGTTTTTGAAGGAGAATTAACAAAGGCCCAGTTCCAAAAAATGAAACTGGAGGTGATGCAAATTATTGATCCAGACTGCGATTCCGTTATATATTTTTCAAGCCGTGACAGCCGATGGCTGGATAAGGAGGTTCACGGTCTCGGTAAAGACACCACAGACAATTTCATTTAACGAACTGCGCTCTTTGATAATTTATAAAATTTCATTTTCCGTCGTTCTCCCGGCAAAAGAACGCTATCCCCAATCGACGGAAAAAATCAGACGAAACTTGATATAACCATATGAAAATATGGACTTAAAAAATGT # Right flank : CGAAACCATAGATTCATGATACCCACTTCGCGTCATTTTTAATCAGATCAACGCGACATGAGCCTATCAAAATTGAAGATATATATTGCAGACGGGTGTAATTCAATAATTTAGATTTTGGCCTGATCACGGGTATTCTGCATAAAAAGTCAATTCGGGAAAACCCTTAATTTTCAATAAAAAGTATTTTCTAACGCCTTCAAAATTATATTTTTTCTTTTCACAGATTTTCGTACTTGTGTTGACAAGAAGCAATCTCTTATCCTACGATACGTGACACTTTAATGTGATGAGCAGTTTAATCCATATCAAATTACGGAACCACAACAAACATATGACTCAAAAGACATTCAGTCCCGGCAGTAAGGGCATGCAGTTCAAATACATTACAAGGCCGGTTGTGGGCCTGTTGGCACTGCTTTTTTTTTCATCCTGTACAACAAAAAAACCCGTAAAGGTCGTCGATAATTCGCAGGTCTGCCAATCAAAAAAAATAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCAGACCAACGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 129656-129031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGRP010000001.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_1_length_246234_cov_96.895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 129655 32 100.0 34 ................................ CGACTGGCGCTTGATAGTGTCCTGGGCAATCAAG 129589 32 100.0 34 ................................ CCACCCTCTGCTTTTATGCTCGCTGATGACACAT 129523 32 100.0 34 ................................ GTCTGATGTGTCAAAAAATACCCCATTGCATTTT 129457 32 100.0 33 ................................ AAAAAAGGGGTGTGCTAATGATGAGGGCAGAAG 129392 32 100.0 34 ................................ AATAATCATGACTTCGCCTTTGATTTTAAAGCTG 129326 32 100.0 34 ................................ AGCAAAAACTCTTTAAACCACCACAAAAGGAGAA 129260 32 100.0 34 ................................ AGGGTCTGGCATTGGATCAAGTCTAATTGGTGGT 129194 32 100.0 34 ................................ ATTGACTGGGAATTGTGCAGGGGCCATCATTTAT 129128 32 100.0 34 ................................ ATCGGGAACGTGCTCTTTGAGGCAGGCAACCATT 129062 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 10 32 100.0 34 GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Left flank : TAAGCTATGACGTCTCCATAGAGGAAAACGGCGCAAAGCGTTTACGGCGCGTTGCAAAAGCATGTCAGAACTATGGTCAAAGAGTTCAATACTCTGTGTTTGAGTGTGTGGTCGATCCTGCACAGTGGACGGTTTTAAGGCAAAACCTGATTGATGAAATAAATCCTGAAATAGACAGTTTAAGATTTTATTTTCTCGGATCAAACTGGAAAAGGCGGGTTGAACATGTCGGGGCCAAAAAGTCGATTGATTTTGATGAACCACTGATCCTGTGAAAAAGTGCGAACCCTAAGTTCGAATTTCATCAAAAGCCCAATCAGGTAATTATATATGGATTTTGCAGGATTTTATATTCATAGGGTCGCATTTTTAAAACCCTTTGAAATCATATTGTTTTTTTCTTTAATAATTCACATTTATTTTAAAAATCATATATTTTCGGAAGGATCGCTCTTTGACAATTTCTTTTTGTTAAATTATAGCAGGTTAACATAGTAACA # Right flank : GGCCAAGGCCCATTTTTCCATATATTGCGTGATTGTCGCCCCCCAGCGATCCGCAACCCATCAACCTGTGCTTCAAGGTGTAAGTCCAGAATCGCTCTCTCTGATTAATTTAATGACATTATTCATGGGCAGCTTGGGTATTTCTCATCTCTTTTGAAAAAGTAAACGATCTGATTTCCTGTCTGGCCTGATGCAAATTATCGTAGATATTGTTTGCGGTGGCCCGGATAATGAAAAATTGTATACAAGCCTCAATCAGTAAAATAATTATATTTGATTTATGCTTGGCGGTTCATCCAGTACGTCCCGAATTTTTTTAGCAAGTTCATTAGTTGCAAACGGTTTCTGCATAAAGGCAACCCCGTCATCCAGCACCCCCTGGTGGGTAATTACATTGGCTGCATATCCGGACATGAATAATAACTTGATTTCAGGACACATCACTGTAATTTTTTCTGCCAGATCCCGGCCGTTCATTTCAGGCATGACCACGTCGGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 534-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGRP010000012.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_12_length_105757_cov_104.603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 533 36 100.0 38 .................................... TTAACCGCAATAACGGACATGGGCCGAAAGCCCACAAC 459 36 100.0 39 .................................... AAGCATAGAGATATTTGGGTGGTGGAGGTGTAACTGTAA 384 36 100.0 41 .................................... ATTTTTGTATATTTGTATTTCAAGTCTCCGATCCTGCCAAT 307 36 100.0 38 .................................... GATATGCATCGCTGAATTTCTTGCTGGTAAGATGGGTC 233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 39 ATTAGAAAGATTGCCTCGATTAGAGAGGATTAAGAC # Left flank : GTGGGATAAATTAGTATTGAGCCTGGGGATAAGAGGTGGGCAGTTTCCCCGTATCAATTGGCGAACTTTTTCTTCGAGATTGTTTTTACGTTAACCTATTGATATTAAATTATAATATCGCATTTGTGACAAAAACCGGCCTGGTTAAAAAGTTCGCCAACTGCTGTTTCCTTTTCAAGGTCACAGGAGTTGGCGAATATTTGCTTTTGGGTGATTTGTAAAATCTTATAATATCAAATGGTTAAAATTTTGGAAAATAGTCGATTTTCGAAAATGGCCAAATCAGGCAGAATCAGAAAGCAGTTGGCGAACATTTAGAATTATATTTTTTACCGTAAAATCAAATAGATAACAAGAAAACGAGGCTAAAAACACAAAAACTTAAGCCTTGTCAAACACCGATTGACGAACTTTTTGCCGGATGTTAATATGCACCAATCTTCAACAGGTTATAAATTTACAGGATCTTTAAAAATATTTTTATATAACAATATTAAACT # Right flank : CAGTGTTTAACTCGATGATCCAGTTTTTAAAAATTGACATGAGACCTCGCTGGCAGTTATTATCCCCATGCTAACAGAATGCTTTGTATTTTAATGATGGGGCGGATTGATAATTCCCCCAAGAATTTAGATTCATGTGCTTTTGAGAATCGTTTGCCTTTACAAAATGCTCTTTTAAAAATACCGAGATCTGCTTGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAAAGATTGCCTCGATTAGAGAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 646-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGRP010000146.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_146_length_861_cov_112.703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 645 37 97.3 40 A.................................... TGTGTTTGGTAGTTCGTGAAAGGCGCATTCTCATGCCCCC 568 37 100.0 38 ..................................... TGTTTCCTAAAGATGAAACGCCGATCATTTCTTCTTCT 493 37 100.0 36 ..................................... ATCCACCAAGTGAGTAATCTTTCGAACTAGATGGAT 420 37 100.0 36 ..................................... GCATTTTGAGGTCTCCGTCCCTTGCCATAACGACCA 347 37 100.0 38 ..................................... AATAAATGACTGCATTTTTTTGAACAATGCTCCAGCCC 272 36 94.6 0 ...............................G..-.. | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.6 38 TATTAGAAAGATTGCCTCGATTAGAGAGGATTAAGAC # Left flank : TATACTGCAATTGAACTATTGTATTCAAATAACATTTATTTTACTCTGCTCATTGAAGGCTGGCCAACCGATGAGTGAGATATCAGTTTGGAAAATTGGTATTATAGCATCGACTTGACCAGCCTTTGCATTTTTCAATACTGATTACCTGGTCTTCCCTCAAAAAAACTGGATCATCGAGTTTAACCAGTTAATGTCAGCGGTGATTAAATACT # Right flank : CCCGTGTGGTTCAAGACTGTCTATCTCAGCAGTTGTAGATAACGTCCTTGCCCGGGGTGCCGATAGGTGCATTCCTCAACAGCCCTGTTTGCGCAGGTCACGAAAGGCTGAACAAAGCTTTTCAATTAAAAAACGGGGCTTAAATAATTTGCCCATTTTGCTATATCCGGGAGCGCGGGCGTCCCGCCCGCATGGCCGCAAGTATTATAAAGATGCGGGCGGGACGCCCGCGCTCCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTAGAAAGATTGCCTCGATTAGAGAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 3099-4027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGRP010000051.1 Desulfobacter hydrogenophilus strain DSM 3380 NODE_51_length_36021_cov_102.553, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3099 36 100.0 42 .................................... TTTTTTTAAACTATCTTTTTTTTCTGCGGGCTACGCCAGCAA 3177 36 100.0 40 .................................... ACTTGGGAGGCAGAAAGACAAACTGCACCCAATTCCATCT 3253 36 100.0 38 .................................... TGTCCAGGGCGACGGCGGAAAGATTATTGTTAAATAAA 3327 36 100.0 37 .................................... TTGAATTGGAGCTCTAAAATTTTAATCTCCTTGTCCA 3400 36 100.0 37 .................................... CTCATCGGAAAATTCCCGGGTCTCCCTAGGAATACCA 3473 36 100.0 38 .................................... GTAAACTCTTGTGCGTCTGTTATGATCAATGCGATCAT 3547 36 100.0 38 .................................... TCTACAAGGGTGTAAGTGATTTTGTTTCCTCTGCACGA 3621 36 100.0 34 .................................... ATTTTGACATATTGACAGCCAAGGGTGTGCTCCA 3691 36 100.0 37 .................................... AAAGTAGGAAGGCTTCCAACAAAACTTGTCAAAAATA 3764 36 100.0 44 .................................... CATCCAAACAAGAGTCCCATTCCAGCACCTATTACCGTTGACTT 3844 36 100.0 39 .................................... CCACTTAACAATAAAGAGCTTAGTAGCGCAAACACAATC 3919 36 100.0 37 .................................... CTTCCTGATCCTCACTGTGATTAGCATACCAGGGATC 3992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 13 36 100.0 38 CTTAGAAAGACTGCCTCGATTAGAGAGGATTAAGAC # Left flank : CATTTGAAAATAAATAACAAAATGACTATTTGAATAGAAGGCTGTTTCCCGATTCAATTGGCGAACTTTTTTGAAAGACGCGTTGTAGCGATAACCCATTGATATTAAATAGCAATGACATATCCATGCTAAAAACCAGCCTGTTTAAAAAGTTCGCCAACTGCCATCTTCCTTTCAATGTCACAGGAGTTGGCGAATATTTGATTTTTGGGTGTCTGAGAAAATTCATAATATCAGTGGGTTAAGAATCTAAAAAATAGCCGATTTTCGAAAATGGCGGAACCCGGCAAAATCCGGCAGCGGTTGGCGAACATTTCAGATTGCATTTTTTGATGTAAAATCAATTATATAACATAAAAATGAGGCCAAAAATGCAAGAACTTAAGCCCTGTCAGACACTGATTGACGAACTTTTTGCCAGATGTTAATATGTACCGTTTTTCAACAGGTTATAAATTTACAGGATCTTTGAAAATGTTTTTATTCAACGATATTAAAGG # Right flank : CAAACTTTTCAGCACGCTTATTAACTTCATCAACATAAGCGCTTAGGAAAATCGCCTGGTATTAGCCTTACAGTATTTCATAAGTCTCCAATGGAAAATCTCGTTACACTATTTGAATGTGATCACGTGTTATGGAATTTAAAAAAAAGTTGCCCGGGTTGTGAAAACAGTAGGAATGATGGTATAGAAAATTTCGTTATATTTTCAGCTATTTTTTAAAAACACCTCGTCCGGATCCGTATCTGATATCAGGATGAGGATTGCAGAATCGGGCTTTTTTTTATGGTTGTATGATGAATTCATAATTATTCAGATTTGAGGTAACCGTGGCATTTCATTTTTCAATTAAAAAATCCACCAAAGCGTTTATAGATGACTGGTATACCAACTATTATCCAAACCAGGACGGGGAGCGGGATGCAGAAGCGTTTGTCCTAGATAATAAGTTTTCAGGCCACACCCCGAATCAGTATAGATACAAAAAAGCATTTGAGCAGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAGAAAGACTGCCTCGATTAGAGAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //