Array 1 369924-370408 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000010.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 369924 37 100.0 40 ..................................... TTATGAGGCAGGTAAACTCGTACCTTATCATGCGACTGTC 370001 37 100.0 37 ..................................... CCTAGGTCGTTCGTTTACCTTCGAAGAACTTGTCCAA 370075 37 100.0 37 ..................................... TAAAATTAGGATTAAGCATTGGTATGACTGACTTTTT 370149 37 100.0 36 ..................................... TACGTGGTGATTGTTGACGGTCAAATGGGGAGTTAC 370222 37 97.3 38 ......................C.............. CATGCCTTCCACCCGCCGACAAAATTCAGCGGCGCGAC 370297 37 81.1 37 .......C.A........A...CA....A.T...... TAAGGCTCTTGCATTTTTGTTCGTATTTGGTTATCTC C [370323] 370372 37 67.6 0 ....T...AC.A.T....A..AAC..AA.....T... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 92.3 38 GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : AGCTGGAGAAACTCGTAGGGAACGCGAGTGCAACTGAGCGAGGGACTTGCTGCACATGAGCCGTTTTCAGTATGGACGGTTGTGTGCAGTTTTTTTGTGGGATTGTAGCGGAATGGAATGAAGTGGTCTGTTCACGCAGGGGGGATTTGTACGGGAGCGGACTTGCCGTATTAAAGGAGAGTGATTTGTTTGGGGAGTTGGATGAAGGAAGTGGCGGTTGAAAGATATTTGCGTTTGTGGATGAAAAGTTGTTTGGGTGCTGGATCGTGTAAAGAAATGGATAGATGGGATGGGGGATAATGTTTTATTATAAGTATGAGGGCGAATGGTTACCCTGTAGCGAGGAAAAAGAAATGAACAAGATGCGTACAGCCGATTTTCGAGGATAGGGCGTGATTTTTGACGAGAAGTGAATCCTCGAAAAAAGAGCGGGTTCTTGTTGGCAGTGAGTATGAGGAAAGCCTTGGCGTTATTGAGGTTAAGCATGGTAGTCAAAGTCG # Right flank : CTAAGCTGGCCTTGCCTGCTCGCGATGCTCCGACAACAAAAGATGCTAGAGAAAGTAGATTTGATGGAAAAGATGGAAAAACTTATAAAAGACGCGAAAAAAGCTGCACGAGAGACTTGCTGCACATAAACCGTTTTCAATATGGACGGTTGTGTGCAGTTTTTTTGTGGGGATTGTAACAAAATACAAGCTACATCGTCTTACTAATGAAGCCTTAAACATAAATGGAAAAAAATGTTGAAAATAGAAAAATTAAAGATTAATATGCAAAAAATTTCAAAATATTTTTAGCGAGGGGTATTGTTGAATAGAAAGCTTGTAGCAAGTTTTATTACTTCTTGCGTTGTTCTGGCGACAATCACTACTGCATTCGCAGCTACTCCGATGGGGATAGCACAATCAGAAGCGTCAATCAGTGGAAATCTGTCTACGGCAGGGGGAGAAAAACATTATGTAATATCTTCGTATGGTATTACGCGTGATATCTCCTCTAGAGTAAA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 22608-21404 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000004.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 22607 36 86.1 44 ......T..CAA.....C.................. TGCTCAACTGCTGTACATCCACTCACACGGCATTCGGCAGCAGG 22527 36 91.7 37 .......T.C.A........................ GATTCGAACTCATTTACCTCATCTTCTATTCCGCTAA 22454 36 97.2 35 .......T............................ GGAACTCGTTCAGTTTGTTCTTTGTACCTTTCTCG 22383 36 97.2 37 .........C.......................... CGAACCATCCGGTAAGTATCAAACAGTTGTAAGCTAT 22310 36 94.4 35 .........C.......C.................. GATGATTAAGCGGCGATGGAACAACTATTATGCCA 22239 36 100.0 36 .................................... TTGGCTTGAAATATGGTAAGTCATCGACACACCTTT 22167 36 100.0 40 .................................... AATTGATAAGCAAATTGAAAGCTCTTAATCCTAGGAGGTA 22091 36 100.0 37 .................................... TCTATTTGTGGGCGACACACACACCACAAAAACCCGC 22018 36 100.0 38 .................................... TTCCCCCACCCGGATCAGGTGGGAGATCAACGTCCCCA 21944 36 100.0 36 .................................... GGCTATTGCTGGCTTAGATGCAATCAAAGAGGCCCT 21872 36 100.0 36 .................................... CCGTAACAAATGCTTCTAACCAAAAGTCTGTCCCTA 21800 36 100.0 36 .................................... GAAAGAACGTAGAGGTGTATTAGAAAGTGAATTGCG 21728 36 100.0 35 .................................... TTCATCTGTTGAACTGTTCGAATGATGTCATCCCG 21657 36 100.0 37 .................................... TCGAAGAAGAAGAAAAGAAAGGAGCCCGCCACCATGC 21584 36 100.0 36 .................................... CGACTCCGTCTGTTCGACATAAGCTGGAAAGTCAGG 21512 36 100.0 37 .................................... GGCCATTAATGATCAATAAAAAATGACACCCTAATTT 21439 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 17 36 98.0 37 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : AAGATCGTAGAAGATCCTGCAAGATAAAAATGGCTTTACCCGAAATCTCATAGTAAAATATGGGCAAGTACATTAGACACGGCTCTCAAGGGTGGTCGGCTCATCTCCCATGTCGGAAGCGAGGGGAGGTGGGAACGTGGCAATTACTCACGAAATGCTTACACTTATGCTCCAGTTCGGCGGCTTTATCGTTGGGCTGTTGAGTCTCGTTGTAACAATCGTTGTTGCCCTGACCAAAAGAAATGACCGCCCTTGAGATTGGCGTCCAAGGCGGTCATTCTGATCGACTATTAAGCTGAGCCGTCCCCTTGAGGGAACGTCTATTGTACTACCGGCAGAGTGCGGGAACACCCTGTCGGTTTTTATTTTGTCCACTTTTGGTTAAACATTAAACACTTCATGTTGAAAGTGTAACCGATCTTGCTTCCATCATAACACGTTTGACATGTCGGCGTAAATAAATAAGCGACCCCACATGTCTTTATAATCTCCTGGTTCAC # Right flank : TCCTGTCTTACCAATCCCTACAACCGCAAGCGTTCCCACACTCTCTTTCGAGCAGCCCATTTTCTCAGTTGTATTCTGCCTGATTTCACGGAGACTCCAGTCGTTCAAACTGGCTTGGCGCTTACTCCCCCAACGTATGCGAGCATCCCCGGAGCTTTTTGGGCTGAGAGGATGCTCGCATCGTTGTTTTCGAAAGCTTAGTGGAAAGTCGAGATTATCCGTGGGAGTAGACTTGTGGAGGGTCTACATTTGCACACGCACGGAAATCGGCCTGTCGCCTTTAGCATGCGACCGATACATTCATTTTACATATTTTCCAAATACAGTTCAACTACTACCGCACTGGTAAACTCCTAGCATCAGCCATTTTCTCGCATCGGGGAAAAGCGCGGTCAAAATTTTGATCCCATCTTCCCTGCATCCTTCCGCCAAACCGCCGCATCCCCTTTTCCACTAAGAGGTATTGTACACCATTAGCGTGTCCTTACTTCGCCAAAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 56-658 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000005.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================= ================== 56 36 100.0 41 .................................... CCGTACAGATCTTTGCAGACTCGCCCGGAACGATGATGGTG 133 36 100.0 38 .................................... CATAGAAAACATTGTTGCTGATGAGGATGAAACTTTTG 207 36 100.0 37 .................................... CATAACGATAATGGCGATACAATTCCACACCAGCTTG 280 36 100.0 39 .................................... GCGTCGGACGTAGCACTTCCGTTTGCCCATTTCTTTCCC 355 36 100.0 36 .................................... TCTGCATTTGTTAATTCTATTCTGTGCTCGATCTTG 427 36 97.2 34 .....................T.............. TGGTCGAAGGTCGACGATCCGGCTAACAAACGAC 497 36 88.9 89 ...........C...A.........A..A....... CACGGGGATGGATGAAGCCAGCACCAAACGGCCAGTCCATTCGAAAACTTTGAAACAAGCACGTGCATATCTAAATACATCTTGCGGCT 622 36 69.4 0 C......TC.CC...A....A....AC.....T..G | C [652] ========== ====== ====== ====== ==================================== ========================================================================================= ================== 8 36 94.4 45 GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Left flank : AAAGCTTCGAGGTTAGCACCAAATAAGCGATAACGCGACCAAGGGTATGTGAAGAG # Right flank : GAACAAAAGCCAATTCATCTAGAAACAGTGGAATTGGCTTTTTCCTATTACCCCAAAATATGAAAATGATTTACAATAAATAAAAATCATGCCCAACTCTTTTCAAAATCAAACCGGGAGGCACCAGCCATGGCAATCCGCAGTATAAAACTAAAGCTCAAAACCCGCACAGGCCCGGAAGCCCAAAACCTCCGAAAAGGAATATGGCGAACGCATCGGCTGTTAAATGAAGGCGTCGCTTATTATATGAAAATGCTCTTGCTCTTTCGTCAGGAGAGCACTGGCGGACAGACAAAAAAAGAACTGCAAGAAGAGCTGGTTCGTCATATTCGCGAACAGCAACAAAAAAATCGTGCAGATAAAAATACGCAAGCGCTCCCGTTGGACAAGGCATTCGCAGCTTTGCGGCAACTATATGAACTGCTTGTTCCCTCCTCGATTGGGCAAAGTGGCGACGCCCAGATCATTAGCCGAAAATTCCTCAGCCCGCTAGTCGATCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 7492-6454 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000005.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7491 36 86.1 37 .....G..TTT..............G.......... GCAGGTGCTTGGTCGTCTACATTTGACCTGCTCTACA 7418 36 77.8 22 ....................G...C.C.A..G.CGT TACGATTGATAGCAGTTTCGCT TC,A [7390,7393] Deletion [7361] 7357 36 100.0 35 .................................... TCGAGTAGGATTTTGTGTTTTTTTACCGTTTGTAA 7286 36 100.0 37 .................................... CTTCTTCGCGAAAGATACGATGGTCGTAACTTGCCAA 7213 36 100.0 34 .................................... TGAGTAGCAAGTGCTATTGTACCGCCACCGCCAA 7143 36 100.0 40 .................................... GGTGCCAGCGTTCAAGCTAGCTGTAGACAAAGAACAGTCT 7067 36 100.0 35 .................................... TATGCTCTCACTGTCATGTGGTCATCACCTGCCCA 6996 36 100.0 38 .................................... CCAGTGCGGATTTCAGTTGTCCGCGCGGGTCTTTCTTA 6922 36 100.0 36 .................................... CCGACTGGTTTAGTGTAGCGGATGCTCATGGCTCGA 6850 36 100.0 36 .................................... CAAACTTGGCTTTCAGTGTTAACGGTCGATCGATCG 6778 36 100.0 36 .................................... GATCAGAGTCATGCTTGACCCACGCGCTTTTGACCC 6706 36 100.0 37 .................................... GCTGTTAACTTGATAAAAGATACTTTTTATCTAAAAA 6633 36 100.0 36 .................................... TGCAGCAGTAGGTGTTTCCGATTCGTCGCAATGTGC 6561 36 100.0 36 .................................... AGCACTGGTGTACCTTATGGCAAAAGGAGTGATAGC 6489 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 97.6 35 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : GCCTTTACCGGACGAACAATCCATGGCGAGTTGGGTCTGCCAATGAACGAAAATGTAAAACGCGACATCGACCCGAAAGTAGGCTGGCTGCAAATTTCCAGCGAAGTCATTGGAAAATACGCCAGCGATTATATTTTCATGGCTGTCGATGCCAAAGCCGAGTCATTTGATTACGCGAATGATCCAATCTGGAACACCTTGGATGCCGTCAAACAAAACCATCTGTACGAAATTGACGGTTACCGCTTCTATTTCTCTGATCCGATTTCTGTGATGGGGCAACTAGAGGATATTGCCGATATGATGGAGGAGAGGGAAAAGGCTAGTGTTAAGCGGGGATAGTGGTGGTGCTGGAGACTTCGGAGTTTTGCCGTAGGCTTGAAGAACAGAAAGATGCCCCTAACGTTGAGTAGGGGCATTGTTTGTTATGCGGGGATTGAATTTTTTACTGAGTTTTCGACAGGCAAAAACGAGTATAACGTCAATGGAACGGTGATATT # Right flank : TCCTTCCTTGCCGAAACCTACAACAACAAGGCTTGAGCAGGGCTTTTTCGAGCGCCAGGAATTTCAGTATCCCTTTCCCCGTCTATGCACTCATTTCCAATGCACAATCGTTCAAAAAAGCTTACTCTCACAAGGATTTCGAGCATCTCCAGTGATTTTTGAGCTGCGGGGATGCTCGAAAATCAAACGCACATACTCAGTGGAACTTCGTGACTATTCGTGGTAGCCGCCCTGTAATGCAGGACGACAATGCACACGCACGAAATTAAAGCAAATCGACATACGGCCTCTAACCGTCGACTATCATCATTGTACTGTTTTCGCCTTGCCTCAACAACACACATCCACTTTCCTAGTAGATAAATTTAGTTAAGTCTCGCGGGAGGAACTCTCTTCCGACCGTGGCAATTCGCTTATCCAATTGGTCCTTGGTCACCGGGCCGATTTTTACAAACATGACCTGATCTTCTGCATGATGAATCAGCTCAGCCAGACTGACC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 330615-332759 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000005.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 330615 32 100.0 33 ................................ ACCATGGAGACCGAATTGAACTCAATCGACGGA 330680 32 100.0 35 ................................ TAATGAAGTCCCGAGCCAAGTCTAATGCGTTTTTC 330747 32 100.0 33 ................................ CCAAAGGCCCATGCCCTCAATCAGTATGCGAAC 330812 32 100.0 33 ................................ GAATGGTACTGAACACCAATGTTGAAGTGGTTT 330877 32 100.0 34 ................................ TCCTGCCTGCAGACAAAGGTATGATTACTTCTGG 330943 32 100.0 33 ................................ ATTCATGGCGCCGGAACATGACGCGAACCCGGA 331008 32 100.0 34 ................................ CCTGTTCATTTTTTGCTGTTGTCCACGAATACCC 331074 32 100.0 34 ................................ AAGAACACCTTGGAACGGATCACCGTTTTCGTCG 331140 32 100.0 35 ................................ ACTCCTCATACCTCCCAAACACGATAGCTTCCATC 331207 32 100.0 34 ................................ ACCGGGCAATCGAGGCAAAGGCTGATGTGGAGAG 331273 32 100.0 33 ................................ TTCTGCAAAATAGTCTTCTAGGTAAACACCCAA 331338 32 100.0 33 ................................ TTCTCAACCAAGATGATGTGACTCTTACCTTTC 331403 32 100.0 34 ................................ CAGTATGTCATGACGCTTTTGCCAAGCATCGGGC 331469 32 100.0 34 ................................ GAGTTTACAACTCTCTACGACATTGCCGTCCTCG 331535 32 100.0 35 ................................ TCTTCAAAGTACCCGGCCAGCACGCGGCTGCCTTT 331602 32 100.0 35 ................................ ATCAATAAATTCAAAGATGGAAATGTCGCGTAAGG 331669 32 100.0 33 ................................ AACCCGAACGGCTCCAAGGCTTGGGAAAAAACA 331734 32 100.0 33 ................................ CAGAACCCACGAAATCGGTTTGACCAGGAACGA 331799 32 100.0 35 ................................ GCCAGCTCTTGAATTGTCGTGCGGAAAACTTTTGT 331866 32 100.0 33 ................................ TGTTTCTAACATACCGTCCTGATCGGAGTAGAC 331931 32 100.0 35 ................................ CTTTTAAGGAGTGGGAATGTTGAGGCGGTTCTATG 331998 32 100.0 34 ................................ ACTTCTTCCGATGATTTTCCTTGTAGGTCTTGCC 332064 32 100.0 34 ................................ CACATATCAAAATAACGACTCCCGAAATCGTTAC 332130 32 100.0 35 ................................ TATCAAAAAACGTTTAGGGGGTTCTCGTCATGTTG 332197 32 100.0 34 ................................ TCCGGTCTATGAAATCACTTACGAGAAGGCGCCG 332263 32 100.0 34 ................................ GTTCCCAATCCTTATAAAACAATTAAATGCCCTG 332329 32 100.0 36 ................................ AGTGGCAAATGCAGCAGGAGCAGGACGGGGCTATCC 332397 32 100.0 36 ................................ GATAAAGATTTTCTCGAGCACCATATTGTCAATATT 332465 32 100.0 34 ................................ AAGCTCGTTACAAAGAAAAGGCCGCCCGCGGCGA 332531 32 100.0 32 ................................ CCAAGTGCTTGGGAATTTGCGTCTTGGATCGC 332595 32 100.0 34 ................................ TAATTTGAAGATTCAGATACTTGGACCAGATAAG 332661 32 100.0 35 ................................ GGTCATGCCGTTCCCTCCTCTACAACCGCCTTCGC 332728 30 84.4 0 .......................A.C..G.-- | TT [332752] Deletion [332758] ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.5 34 GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Left flank : TTCTGGAAGTAGGAGTGATGTGGGATGATGGTGTTAATTACTTACGATGTGAATACAACCTCTGCTGATGGGCAAAGACGCTTGAGACAGGTTGCCAAAACATGCGAGGACTACGGTCAGCGAGTGCAAAATTCGGTGTTTGAATGTTTGATTGATTCGCAGCAGCTGAAGGAATTGCAGATTAAGCTGAAAAAGACTATAGATCCGGAGATGGACAGCTTGCGCTTCTATCGGATTGGGAGTAATTGGAAAGGTAAGGTTGAACATGTTGGCGCTAAACAAGGGTATGATCCAGAGGGGTTTTTGATGATTTAGCAGTGGATATGGCATTTGCGAACACTAGGCTCACATCGATTTTCAGGGAGGTTCGCAAATGCCTGCCGTTGCTGGGATTCGAGGTGTTTTTGGTATATGCTGCTGCGTATTATGCGACCGTATAAACGAGGTTCGCGGAAATCGCGTGAAATCCCTAGTCAGGACAAAGCTTCCTAGGTATTGCA # Right flank : AGAATTTGAGGACCTGTTTAGGGCAGTGACACCTGACTCTGGTGGAAGTCCGAACTGGTCAGATGTACTACCAAATACAGAGAAGTTAGCTCAGCTAGTAGACATAGGCCGGTAGTTTGATCTCAATAGTTCACCATTTAACTACGGAAACGGCAGTAATGCTGTTTTACATTTTGTTCATCGCCAATTTTTTGCTTGATCCTAGACTTTTCTGGAAAGTGTACCTGCTTTTTGGGATGGGAAGCTATGGTTGCTCTACATTAACACTCTACTGTATAGCAAAGATGGCTGCGATGCTACTAAGTAGCATATCAATAATGGTTTAGTCCTCGATGTATTGGCAGGAAAGAAGTAGAAGAGCAATTTTCGAATTCTAAATGTAAGATAGTTAATATACGCATTGATATGTATTTTTATTTCATCAACTAACAATCCCATTCTTATACGCCCTCCCAAGTGGGAAAAATCGAGATACCATCACATTATAGCTGCTTATGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 1241-1793 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000015.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1241 37 100.0 35 ..................................... GGAGAGTTTGATGAAAAGGTACAAGTTGAAAGGTT 1313 37 100.0 37 ..................................... AAATACAACATGACCGAAGATGCCTTCACGCTCATTG 1387 37 100.0 39 ..................................... CCGAAAATCTGCGAAGGATTGCAAACGAACCGAAAGCAA 1463 37 100.0 37 ..................................... CAACAAAACGAACGGCATAAACGGCATCATTTCTTGC 1537 37 100.0 35 ..................................... AAAACGGGCCTAGTTCTTGTCCCATATCCATCCCA 1609 37 100.0 36 ..................................... TGGAAAAGTGCTTGCAGTCCGGGCTGAGCCAGCAGA 1682 37 100.0 38 ..................................... GTACGGCAGGGATAGCTGCAACTCACCGTTCTTTACCT 1757 37 81.1 0 ...................A.GTA..CA........T | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 97.6 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : TTGCTGTTCTTCCTCGTTCTCGATGGAATCGGGCTTGTAGTAATAGGTGCTTCGTGGGAGTTGTAGGACGTTGCACATTGCTGATACCGAGTATTTGTGAGCGTTATTACGAATCACATTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATATCGTTTTCCATCTTCAGTCGCTGATTTTCTTTCCGTAACGCGATAAGCTCATTTTCTTCAGGTGTTCGATTCGCTTTCTCCGTAAAGGAACCTGTGTTTTGGCTTTGAGAAATCCACCGATCTAGCGCTGATGCGGTGAGACCATACTCTTGGACGATGCTCGTCCTTGATTTTCCATTCTCGTATAGCTTCACCATTTGTTGCTTAAACTCCGCTGTAAACGTACGTCTTTGTTTTGGCATAATAGATCCGCTCCTTCATTTCTCTCTATTCTACTAGCCCTTATTTTTTCTGTCTAATTTAGTGTAGCCGATCCAAAAGTAACTATTGAGTTAATCAAC # Right flank : TGGCTGGCGCTTATCGTCGCGTCCGCACTCTTGTGTGGTTGCATTAAAGACCGAATAGTGCTGTTCCGACATGTAGATCATGAAAGCCACCGTTAAGTTGAGCTATGCTCATTAGAAGTCCTGAATGGAACGGCGGAGGAAAGGAATGCAGGGGAAAAGCCACTGCTTGATAACGGGCTGGCACTGATTGATGTTCACATGTGCTAAAGCAGGGCAGGGCTTCCAGCGTTGATGGAAGGCAGTTCTAAGAGTAAGGCAAGTTGATTTCCAACAGTGGTGTTGAGAAGATAGACACTAAAAAAGGCACGGAATTGATCACCCGTGCTTTCCAAAAGATGCGATTTGATGAATAAAGTAACGCTCAATGCTAACTCCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 2666-4553 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000015.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2666 37 100.0 36 ..................................... ATCGACACGCAACAAAGACCCAATCACAGGGAAGTC 2739 37 100.0 37 ..................................... GGCAATTAAAGCATTGCAACGATGTTCTCTCGATGAT 2813 37 100.0 38 ..................................... CTTTCTAAGCGCTAAACGGATCTCCCGTTGCTGCTCTC 2888 37 100.0 35 ..................................... GGATAACTGGCAGGGCCTTCATTGACGAGAATTGC 2960 37 100.0 37 ..................................... TGATGCACTGCCTCTGCCATGCCAACTGTTCGGCATC 3034 37 100.0 37 ..................................... AATCTGGCGGTGGTGGTATCTCGTTTCCGATTTTGTC 3108 37 100.0 37 ..................................... TGCGACCACGGGCCAAATGCCGCGAAATGGTTATCCA 3182 37 100.0 37 ..................................... CCGACGATCTCTCCGCGATCAAATGGATTAGTGACCT 3256 37 100.0 37 ..................................... GGGCAGCCGCTAAAGAAAAAGAAGTCATTTCGCATGA 3330 37 97.3 37 ..............T...................... CCGGTGAGCAATCGCAATTTATACTGCTGCCCATCAA 3404 37 100.0 36 ..................................... TCGAAGTCGGTCGTTCACGCACTGGCCGATGTGCGC 3477 37 100.0 37 ..................................... AGTCTGGCCTATCATCAGGTTCATCCTCTTCCGAATA 3551 37 100.0 38 ..................................... ACGCAGAAAAGGAGAAGAATTGGCTGATTAGATTTACC 3626 37 100.0 38 ..................................... ATGAATTTGGATAAACTCTATACTTAGTTTCTTTCATT 3701 37 100.0 37 ..................................... AAGTCGGCGCAGGTAGCGCGCTGCGGTAACTCTGTAC 3775 37 100.0 37 ..................................... TATCCAGTATGATAACTTTCATATCTCGGTAGGACTT 3849 37 100.0 37 ..................................... CTATCTGATCCGGTGTGTATTTAGCCAAAGCAGATAG 3923 37 100.0 38 ..................................... CGTTAGTGGATGGTACGCTCTACGCGGTGTCCTGTGAT 3998 37 100.0 39 ..................................... AGATCTTCGTAATAAGGGTTGATGATCGGGCCGTGAATG 4074 37 100.0 36 ..................................... ACGACACATTTCGGCTGCGTTTGTACGCCTCCCAAA 4147 37 100.0 36 ..................................... GAAAAACCGGAAAAAATGAGTAAGTTTCTCACCAAA 4220 37 100.0 36 ..................................... ATTACATCCCCGATCACAACTTTCCGGCTAAACACC 4293 37 100.0 38 ..................................... ATTTACAAACTCAGGTGCATCTAGAATCTTCGCGGATG 4368 37 100.0 38 ..................................... ACACAACATACGACAAGGACATAACCACCGTCTTGCCT 4443 37 100.0 37 ..................................... TGGCAAACACTTCTGCGATTGTCAGGTTATCAGTCAC 4517 37 91.9 0 ......................C....A.......G. | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.6 37 GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : CCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCATGAAATCGATTTGGGATTCATGTTATGTTCTGAAAGCTTAAACAGTAAGTTGGATTGCTCCCCATGAAGAAATTTGGAGCGTTCAAGTGGCGGTTGAAGTTATTTTATGTAGTGGATGAAAAAGGCTTTTTGGATGCTAGACCGTTTAAAGAAATGTATAGATGAGATGGAGGATAATGTTTTATTATAAACATGAGAGCGAATGGTTACTCTTTAGCGGGGAAAAATAAACAAGATGAGCACAACGTGATTTTCGAGGATCGGACGTGATTTTTGACAGAAAATGAATCCTCGAAAAAAGAGTGGTTTCTTGTTGGCGTTGAGTATGAGGAAAGCCTTGTCACGACTGGGGTTCAGCATGCCAGTCGAAGTCG # Right flank : CTTCCAGCAAGCCAGTCATGATGCTTGTCCTTGACGGCGTTACATCGAAAACTCAAATACAAGTAAACTAACCCCAATCCCCCTATGAGGCCCCTCAAGAAAATCTTGTAAAATGCTTCTGCACAATTGCAAATGGCACCCCAACTTGACACAGCCCCCTTCCCAGCTCTCGTTGTATTGCTGAAAATAATCGAATTTCAATCCCCTAACTTTCCAGCTCTGTCATACAAAAGTAATCAGGTAAGGTTACCCCTCGACTGCGAGGTTAGTTTCAGTCCCCTTGCCACCCACCTCCCTCCCCCAAAAATCCCCCCTATATATTCCTTTTCCACCCCACTCATGCTATATTATTAGGAAATAAGTCCCATTTCCCCATCTTTCGACAAAATGCCTCGCAATGTTTCACAAAACACCCAATACTCAAACACCTTTTTACCCAAACCAAACCCAATCTAAAAACCCAAAGACACAAGGCTCTCTTTCAGTAAAAGTGGCAGCGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 646-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000013.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 645 37 100.0 37 ..................................... ATGTTTCAAGCCAGCATGCTCGAAAAATGTTCTACTG 571 37 100.0 36 ..................................... AGCCCATAAATGGCAGCAGGAATCAGTGCGAACGGC 498 37 100.0 36 ..................................... CGTAAAACCACCAGCAGAATTACCGAAGCCTGGAAC 425 37 100.0 39 ..................................... CAGGGCAAGGTGGAGGAGAACCTCAAGGCGACGCAGGAG 349 37 100.0 37 ..................................... TAACGTCCAAAATATCAGTGACGTAAAACAGGTCTTG 275 37 100.0 38 ..................................... AGGTTTGAACGCGCTATGGAAAACGCGCTTGAGAACAC 200 37 100.0 36 ..................................... TTCATCACGTAAACAAAGAAAAAAACAAATCGAAAT 127 37 100.0 38 ..................................... CTAAAAAGCCCCTTAGACACGTTTTGAACGTAATGGGG 52 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : ACATGGGACCCAAGGCAACCTTTGAAAGCATCAGTTCTTTTGATGGTACGAGTGCAAAGATGGGACGAGACCGAGTTATGAAAACAGTGTTTATTCCGTATCACCAAAAGCGGGCAAGCAGGGATTTTACTTGGTATACGCGTGAAGAGAGTTAAGTGGTTTGGTTGGAGCAGGGGCAGAAGACAGAAGGCTGCCCCTCCCCTTTTAGGTGAAGAGATTGGTTGTGGTGTTGTTGTCAGGAAAAGATGGAAGGGTCTTATAAAAATGGGGAAAATGATTTATTATTGACATGAGAGTACATTGTTATGCAGAAGAAAGTGAATACTAAGGCTAGGTATTAGGGGTAGCGGAAAAGCAATACAGACGAAAAAAGGGATTTTCGAGGATCGAGCGTGTTTTTTGGCAGAAATGCAATCCTCGAAAAAAGTGAGGAATGCTTAGGGCTGTGAACGCGTGTAAAGCCTTGGTATTACTGAGTTTAGTTGTGCCGATCGAGGTCG # Right flank : CTCCCGTTGTTATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 17502-16877 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000013.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17501 37 100.0 36 ..................................... CCCCTGTGGTTAGTTTAACAATATCAGAGAAATGCC 17428 37 100.0 36 ..................................... CTTTCCGATTGCAACTGCAAACTGGGGAACTGTCTC 17355 37 100.0 38 ..................................... TTTTCTTGCCGACACCGATGAAACTCCGCGCCGGAATT 17280 37 100.0 36 ..................................... ATGTAGTTGAGGTCCAACTCAGCGCGGTGTACACGG 17207 37 100.0 37 ..................................... CGGTGAGGATGAGGACTCTAGGGAACACTGGAGTTCT 17133 37 100.0 37 ..................................... AGCTAGGGAGGTATTCGGCTACTATGGCGAGTAAGAA 17059 37 100.0 36 ..................................... TTGAATCGTTTATTATCAAATATTTTAGATTTACTG 16986 37 100.0 36 ..................................... CGTGTTCCTCGATCCGCCGCAGCAGTGGGCAGTATC 16913 37 83.8 0 ................A....A....AAA...A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.2 37 GTTACATTACAGACCCGAAAAGCAAGGGGACTGAAAC # Left flank : TCTAAACGGCGTGGAATTTCGGTTTTGGATACAAGCTTCACGTTGTACTTGTCCGAAGGTTTTGTGAGCTGATTTTTTATGTATAAATCATTTCGAAAATTGGAAAGAGGGTAATCCCGCCATCGTGGAGAAGCAATATTAGGGAAATGCGAATGTATCTTGTATCTAAAGGTAATATAGAGAAACTGTAACTGGCTTTGCTCCAGAGTTACTTTACAAACTAAACTATCGTTTACTACTGGACAGACGACAATTCGACTTAGCGAACCTCATAAACCTATAGCTGAAAGTAGAGCAATGTTTTATTATAGACAGGAGAGAGAATGGTTATCCTCTGGCGGGGGAAAATAGACGATATGGGGTACTCAAATGTAGACTTTCGAGGATAGGCTGGATTTTTTAACAGGAAATCAATCCTCGAAAAAAGAACGATCTCTTGTTAGTGTTGAGATTAAGACAACCCTTGGTAGAAGTTGATTCGTTTGCGTTAACCGAGGTCG # Right flank : CGATAGACTGATAAGCGTAGCAGCAGCCGAGTGCCAAGTGCCGAGGAGACTGAAGCACTGCTCGATCATATGTCCAACCAGTTCTTTTTTCCGATTGCATGAAAAACCCGAAACCCTAGAGACCCCGACTCGAAGTCGAGCGGTTGCCTCAAGTACATTTAGTTTTTGCCCGACCTTTACGCTGATCAACGAGGGAATTGTCTAAATTGCACGCCAATAAACCGTAAAACCACTCCCTTATCTTTTGATCGCGCCTTCCCCAATACCTGAGCAATCTGTATAAACCGATATGCATGAATCGCTTCTCAAAAAATCAGCATCTCATAACTATCAGCACTCTCCCAACATTAAACTCTCTGCCTTTACTCATGCAGAGAGTTTTTGTTTTTCTCAGATGCCGTTTACTCCATCAATTTTCGGACGAGACTGAATCTATCCTACTAAATGCTAAATGGGGGTGGATGTTTGTGCAGGTAGTAATTGATGAATACGGATACGCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTACAGACCCGAAAAGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 19222-18221 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000013.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19221 37 100.0 37 ..................................... GGCGTGAACGACGAACCGTTAAAAGAAAATAAAGAAG 19147 37 100.0 36 ..................................... TCAGGAAGCGCCAAACAAATCGTAAATTGCCGTTGT 19074 37 100.0 38 ..................................... TTGGTGTAAAGCCTGCATCAATCAAACGACGATAATTA 18999 37 100.0 37 ..................................... CAGGGGCCGCTTTCAGCAAGTCGCTGATCGAAACGCC 18925 37 100.0 38 ..................................... TCGAAGATCGAGCGGAGCGAAGAGAAGTCGATTTCGTC 18850 37 100.0 39 ..................................... GCTGGTTGTCAATAGGAAAGGAGAGAATATCTAATCTAG 18774 37 100.0 37 ..................................... GTAGAAGTGAATATGAGTGGAGAAGTTGACTTTGACA 18700 37 100.0 37 ..................................... TCACTTCTTTCTCCACTTTTGGTGGAGCTGGAACTTT 18626 37 100.0 39 ..................................... CAGGGTAACTCTTTGGAATCGTTTATGGTAATTACCACT 18550 37 100.0 34 ..................................... AGCTCGTCCTTACACACAAATACCGCATTTCCTC 18479 37 100.0 38 ..................................... CGGAGACATTAGAATGGCAAGGTGCGTGGCCTTGGGTA 18404 37 100.0 36 ..................................... TTTGTTTTAATCATGCAATCGATGCCTTTACTCATC 18331 37 97.3 37 .............T....................... CTTTGCCTGCATTGCTTTGATCAGTTCCTGGTTGCGC 18257 37 97.3 0 ......................C.............. | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.6 37 GTTACATTGAAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : ACATCTCCTTTATAGAGCATCTCCGTAGAAAATCCAGGGTTTTTTTAGGGGGAAATGAATGAAATTAATTGCAGTACCACTTAATGGTATCATTTTACAGTTGTTTTGCAAATACCACTTTCTTCCTAAAATCAACAAAAGGGCTTGCTCCAAATGTAAGAGGCAAAACTTGAACAATAAATCGAATTGATCTATGGAAAGGGTTGGATAATATTAGATGTTTGAGTAATTTTATGTTAGTGAATGAAAAAGTCTTGTTGGTCCAGACCGTACAAAGAAATGGGTAGATGAGATGGAGGATAATGTTTTATTATAGGCATGAGAGCGAATGCTTACTCTTTGGCGGGGAAAAATAAACAAGATGAGAATAAGCTGATTTTCGAGGATAGGCTGCGATTTTTGACAGAAAATGAATCCTCGAAAAAAGAGCAACTTCTTGTTGGCATTGAGTAGGAGGAAAGCCTTGTCGTGACTGGGGTTAAGCATGTTAGTCAAAGTCG # Right flank : AGCGCGATCATCAAACCCGCTACGATGACGGTTTCAAGTTAGATCCAAGCTCCGAAGAACAGGAGATAGATGGATTGCAAAGAAGGGAATATCAAATCAGTTCGAGGGGAAACAGGTATCCATTACAATGAGCTGACTTCATGGAACGAAAGATACTGAGCATCTCTAGAATTTTAAATTTTTTGATCTTTCATCAGATAAACAAAATAACGAATTGCTTCTAAACGGCGTGGAATTTCGGTTTTGGATACAAGCTTCACGTTGTACTTGTCCGAAGGTTTTGTGAGCTGATTTTTTATGTATAAATCATTTCGAAAATTGGAAAGAGGGTAATCCCGCCATCGTGGAGAAGCAATATTAGGGAAATGCGAATGTATCTTGTATCTAAAGGTAATATAGAGAAACTGTAACTGGCTTTGCTCCAGAGTTACTTTACAAACTAAACTATCGTTTACTACTGGACAGACGACAATTCGACTTAGCGAACCTCATAAACCTAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 23042-22633 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHV01000013.1 Brevibacillus parabrevis strain NRRL NRS 605 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 23041 38 100.0 36 ...................................... AGGCGCAACAACGGAGCCAAGCGCTGCTCCGGCGAT 22967 38 100.0 36 ...................................... TAAATCCAATAACGTATGGGAATGCGCGTGCGGCGA 22893 38 100.0 37 ...................................... TGTTTGTGACACCGACTATTTTTTTATAGTAAGTAAG 22818 38 97.4 36 A..................................... TGTCAAGAAGACGGGGTGGGCTTTTTGATTCTCAGT 22744 38 100.0 36 ...................................... AGGCAAGAACGTGGGAGTCGCAAAACGACTCAACCT 22670 38 92.1 0 ............................A.C......A | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.2 36 GGTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : TGGAGCAGGGCCGGATTTCCACCGCTGTCCGGTGACGTATCAAGGTCATGAGACACTGATTCTCAACCGTGGCATTGAAAAAAGAATGTTAACAAGAAAGACACGGAATGGATCTTCCGTGTCTTTTAATAATCAGTTGTATTGCAACGGACCAGATAGCGAGTGGTCCTGAAATGTCCGGCTTTCCAGGTTGCAGGAGGATATTGTTTGTTTTTGCGATTGCAATCTTTAGTTCTCGATTAGATAGCTCTTTTAGTATTGGGCAGTACCAAGAAATGTATAGATCAAATGGGAGGAATGTTTTATTATAGGCATGAGAGTGAATGGCTATCCTTTAGCGGGGAAAAATAGACAGACAGAGATAGTTAAAGTCAGATTTTCGAGGATAGGCTGTGGTTTTTGACAGAAAATGAATCCTCGAAAAAAGAGTGGTTTCTTGTTGGCACTGAGTATGAAAAAAGCCTTGGTGTGACTGGGGTTGAGCATGTTAGTCAAAGTCG # Right flank : GCTCAGTCAACATGTGTAGTTTTTGAACGACCTTGTTCTTGAGGTAGTAGCAAGCTGCCTCAAAGCTGCCGACAACGAATAACATCCAGTAAACAGCAAGAAGCATCCTCTGCTATTGGAGGATGCTTCATTTTTAGAGCTATTTGATCTCAAAATCGTGTAGCTGTTGTATTTGCCAAGTGCTATGTGCTTTCTCGGATTTTTTGGGTCCAAGTTGATTACTTTTTTCACAACACATCCAGCATGAACAGTGAATTTTACCTTTGGCTAATCGACCGTAATCATCATTTTTTACTTTCCACTCATAATGCTTGATGATACTCAACCTACGATTAATAACTCGTTTACGATGGTGTCGGTAATAAGCTCGATTTCGATTGGATTGGTACGGCTTTAACATATAAAATCACGCTCCCCCGGCAGATGAGCTTAGCCTGTAAAAGCCCCCAGGGAAATGTTTGGGCTGTTACAGGCTAAGCATGGAGGGAGCGGTGAGGCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //