Array 1 256000-254445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDAF01000017.1 Streptococcus agalactiae strain SH0668 ctg7180000003207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 255999 36 100.0 31 .................................... AACGAAATTAAAATAGGAGTATAAAAAAATA 255932 36 100.0 30 .................................... TCAGAAAATATTTTGATTATTTTTATACAA 255866 36 100.0 30 .................................... AGACATTTACCTATCACACTAGAAAGTCAT 255800 36 100.0 30 .................................... GAGACCATGAAGGTAATGAATTTAAGTCAC 255734 36 100.0 30 .................................... ATCTCGGAATACTGATGAATGGAAAAGTTG 255668 36 100.0 30 .................................... TAAGTATTTGTATAAAAAATATGACGTACA 255602 36 100.0 30 .................................... CTTCACAAAATGCGGTCTAATCCAGATAGA 255536 36 100.0 30 .................................... AAGGGTTCGCAAAAGGCAACTTCACTATGT 255470 36 100.0 30 .................................... CCGTCATCTGTATTAAGATATTCCGTGATA 255404 36 100.0 30 .................................... TGCTCCTCTAAAGACAATGTAATTACCTCT 255338 36 100.0 30 .................................... AACCAAAATTAGGTGAGTCATCAGTTGTTA 255272 36 100.0 30 .................................... CATTTTTTAAGCGTGAAAGGACAATTAGAG 255206 36 100.0 30 .................................... GATATAATCTGAGTCTTGTGTGAATATAGC 255140 36 100.0 30 .................................... CAAGTTCTTGATTACATTTGGAATAACGAT 255074 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 255008 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 254942 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 254876 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 254810 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 254744 36 100.0 30 .................................... TTTTCAGCTGAGGAAGTAATCTTTTCTTCT 254678 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 254612 36 100.0 30 .................................... GAATGAAGCAGGTATCAAGGATTATACTTA 254546 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 254480 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //