Array 1 837-1104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000194.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 837 28 100.0 32 ............................ TGAAAGAGTCAGGGATGATACGCAGCAGGTAC 897 28 100.0 32 ............................ AGTAGGTTGTTGTATTTCTCAATCTGGCTTGA 957 28 100.0 32 ............................ TAGACCCTGATGCAATGATTGTTGGTGAAATT 1017 28 100.0 32 ............................ TTGTTCATAACGCCAAGACAAACCAAATCGAG 1077 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAAGCATCAACCATATCATCTATCGTGGCTGATTTTATCGCGACACGATCTGGCAATGATGTTCTGGATGATGGAAATATAGCCAAACTCACCACTCAATTAAATAAAGCACTAGAGCAAAAAATTACAACAGACATTCCCAGTGCTTCATTAACACAAAAGGGCGTTGTTCGGCTTACAAATGTGATTGGCGATAGCAACACATAGGCGGTTACACAAAAGCTTGTTCAGGAAGTCATAAATTCATTACGTGAATATACCTGCGAGGAGATAGATAACCGGATTAAAACAGTCAATGAAATTCCTGTTGGTTCTCCTATTCCGTGGCCGTTACCTCATCCACCGTTCGGTTATTTCACTTGTAATTTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGGTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : ATAGAAAGTCTAATGGAGATGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAATGTATTGTTGTTAAATACAATGCTGCAAACAAAAACAAATAATGCAGAGCTAGCGAGAAAAATAGGAACGTTTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGGTAGAAAGCGCGTTAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTACACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCATCGGTTCTACGAATAGAGAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCAATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACCGGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29837-29570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000046.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29836 28 100.0 32 ............................ CCTGATCGCCAGTCACTCCCGTGTTTTTACAT 29776 28 100.0 31 ............................ ATTGCGGCTAAGTAAGAGAGCGATCACAAAC 29717 28 100.0 32 ............................ TGCTCATTACAACGAAACAATGCAGAAGCAAT 29657 28 100.0 32 ............................ TGGATAACTTGCATATAAACCACTGCTTGAAT 29597 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGGTGCGATAACAAATGGTTACCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTTTGGCGTGGCTACAGATGGTAATCCCAAATCGGTAGGTCATTTTACCCCGGATACTGTATACACTGCATACGGTTTTGGGTTCGATACGTCAAGGGTTGTTCCTGTCGCTTCGGAGAACCGCCCCCGCAACGTAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCAGAATATAGAAGTACTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGTAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGGACCTAAATTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGTTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : TGAAGATAGTGGTGCCAGGCGGGAGTGGACGACCCGCATTTGGGAAGGTCATCCCCCCTCATTTCATGAACAAAGGTCTTTATCTGAAGCTATACAGAGAGCATCAAGTAAACACGCAGCGACTACGCGGACATAAGTCATTTTGATTATCGGCATTCAGCGGTGTTTTATAACACCTGTCGTTGACTTAAATGGCCCCGCGTCTCCGGGACATGAATGTGAAGACGGAATACCCGAAAATAAATCATCGTATCCATCATCAATCATTGCATTTTCCCCGGACTTCGGCTCCCTATTTCAGGAACACCCCCTTCAATAACTTTCATGCCATTAAAAATAGTCCAAAAAAATATCCCGGACTATCGCATAGAATAGGACTTCCTCATTTCCAGCCGCATTATCCTATAAAAGCTATAATGAATAAGCGAGTTATTTCATAATATCATCAATATGACGCCACTTAATTAAATTTATTCTCATTCGCATAATCTGACTGATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57572-57958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000008.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57572 28 100.0 32 ............................ ATTAAAAGCGGCGTTCATGCCTACGCTGAACA 57632 28 100.0 32 ............................ TGATCCAGCCAGGAACTGTTGGGTTGAATTTC 57692 28 100.0 32 ............................ TATGTTCCGCAGCATTTTTCGCTTCATCTTCT 57752 28 100.0 32 ............................ GTCTATCCAATCTGTATTATTAAAATCCAGAC 57812 28 100.0 32 ............................ TATGCGGCAAAGGTTCATTACCTAAGTAAGGA 57872 28 100.0 32 ............................ ATGATGCTGAAGATATCTGCCGGGCAGCTGGT 57932 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCTAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAATTATTTGGTTTCTAATTAGTGGATGAAGGGCGCCAGGCACCAATATCTAATGCAAACTTAAGGAGTTGGGTGAGAAGTGGTATCCGGGTTCCAAGTGTTCAAATAATGTTTGAGCTGGATATTAAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATATTAAGGCAAGTTTAGTTGCTCTTATGGCTGCTAAATTTTGTCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCTCAGTTTTGACCCTTTTTTATCATCAAAAAATAACCTATTGATTTAAAATCAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACTGTCAGCAACTTAAAGTTAATATGTAACA # Right flank : ACACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGGCGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGTTGGTTGAAGTCTTTTTTTTGCTTTAATTGCGAGTGTGACTCCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 976-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000151.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 975 28 100.0 32 ............................ GAACCGCAGCCGCCTCTGCTTTGATCTCCCCA 915 28 100.0 33 ............................ CTGCCGGCACTGCTGCTGACGGGGTGCGCCATG 854 28 100.0 32 ............................ TTTGGCACCACCGCCAAGTCCAAAGAAGCGGA 794 28 100.0 32 ............................ CAATCATTAAGCAACACAGCTAATCACCAAGG 734 28 100.0 32 ............................ CGATCCTGTAGGCCCAGAAAGAATGATCACGC 674 28 100.0 32 ............................ GGCGGCATGGTATGTCGTAAGATAGTTCTGTC 614 28 100.0 32 ............................ TTACGATATATGTTTGTCATATAACTTTCAAC 554 28 100.0 32 ............................ AGCACGAAAATTTCATTCTCTGCTGCATAGAC 494 28 100.0 32 ............................ CGGATACGTGTAGGCCGTGGATACCAATTTTT 434 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAGAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAATCTGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGAGTGGATTTTAATCTATTGATTTTTAATGGGATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATGAATATTGAAGTTCTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17176-16250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000057.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17175 28 100.0 32 ............................ ATATTCAGAGATAGTTATTCTTCCCCGCCCAT 17115 28 100.0 32 ............................ GCCAAGCGCCAAAAACAAAAGCCGCGCCCCAT 17055 28 100.0 32 ............................ GCCAAGCGCCAAAAACAAAAGCCGCGCCCCAT 16995 28 100.0 32 ............................ GCCTTGAGATACTGTAAATCTTTCATCTCTCC 16935 28 100.0 32 ............................ TGATGAGAAAGCACATTGAGAACGAAATGATA 16875 28 100.0 32 ............................ TTCGGTGGGCTTGGCAATGGCATCCAATGACT 16815 28 100.0 32 ............................ GTTAAATTCGTCGGGAATTTCTAGTTCACGAT 16755 28 100.0 31 ............................ CCGTGAAGGTTCATGAGGCCATCCATTTCCA 16696 28 100.0 32 ............................ TTCTCTTAGCATTTGTTTGCAGAGAGAACGAA 16636 28 100.0 32 ............................ TGTCAAAACTTGACATTCAAAAACGGATTTCA 16576 28 100.0 32 ............................ TGGCGCGTGCGGGGATAATCCTGGTGTTTCAG 16516 28 100.0 31 ............................ GCGAGGATATTGACGGTAGTAAAGTCTGGGA 16457 28 100.0 32 ............................ GCACTCAAGGCGTTGTTGAAGCTGTGTTGAAT 16397 28 100.0 32 ............................ TGAGGGAAGCAATACATTTTCGCGTCCTCGAT 16337 28 96.4 32 ...........C................ ATTGCCCTGAGAGGAAATGCCTTAACATAATG 16277 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGCTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTTCTCAATATGCATCAATTGTTATGCTTTTGTGCATATTCTCCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAAGGGTTGCCACTGGGTGGTAGCCTTTGGGGACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACCCGTTGCATGCAGAATCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCGTCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGAATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27175-26312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJS010000057.1 Photorhabdus bodei strain HU2.3 Plum_HU2.3_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27174 28 100.0 32 ............................ CGGACAAGTAATAGAGAAAATTGAATCAATGC 27114 28 100.0 32 ............................ CTCGGCTATTTTCATTCGAGACGCTATTCAGG 27054 28 100.0 32 ............................ GGAAAGATAACACGGCAAGACGGGCAGCAAAT 26994 28 100.0 32 ............................ ACCTCAAACAGATTTAAACAGTTCGTCATGGC 26934 28 100.0 32 ............................ ACAATTCTGCTGTACGAATTGCTCCACCCGCC 26874 28 100.0 32 ............................ TGCGGCACCGGAGATAAATAATGAATGATTAT 26814 28 100.0 32 ............................ TTGGGAGCGCGGAACTTACGCATAAATCCCGC 26754 28 100.0 32 ............................ TTGTGCTCCAAAAATGCCATAACACGGCCAAG 26694 28 100.0 32 ............................ TTCTCTTAGCATTTGTTTGCAGAGAGAACGAA 26634 28 100.0 32 ............................ GAATGAATCTTTTACCGGCTTTCCGTAAGGAT 26574 28 100.0 32 ............................ ATAGTGCGCTAAATCACTTCCTTTGGTTATTG 26514 28 96.4 32 ...........C................ ATTAGCTCGGGCCAAGGCTTTAAACGAGCTAC 26454 28 96.4 32 ...........C................ CAGCCGCGCTCAATTAATGCATCACCGGGTTT 26394 28 92.9 27 ....................T...A... TAGAAAGTCTTCCTCTTCTCCTATCGA 26339 28 67.9 0 ...TG.....AC.T..AT........GT | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCTCGCGCCCTGGCGTATTCTGGAGGTGAATTATTATAGGATTATTAGCTAATAAAATAGATGAATGAAAATAAAATAATTCATGAGTAGATGAGTTTGATTGAATTGGAGACTTGGTAAATTGGGTAACACTGAAACTTTCAATATTTAAATGCATGGTGAAATTAGTGCAACTGTTGGCGTATTGAATGATGTCATTATTGAAAAAGGCTACGAGATAACAGGTGCTAGTTTTTGTTGATGACAGAGTTCAGTGAATGGTTCCATCATAATTGAACATTTTACAGGCAGTAATTCTCACTTACTGTATAGATCTTAGGACATACGACTTAAGTATGTGATGGTATTTTTGTTGCTACCTTATTTTTACCCTTTTTTTGAGGTGAGTTGTAATTGATTGATTTTATGTATAAATTAATTATCTCTTATAAAAAGGGTTTTTCATTTTTTAATAGTTATGCTATTTAAAAATCAACAAGTTAAAGTTAATATGTAACA # Right flank : ATAATTATTCCTGTTTAGGGAAGGTGCTATGCTGTTAATTAGTAAATAATTGTAAATTTTTTTAATTTACCTTTGTGATGTTTTACTTGTGTGAAATTTATGCATAATATTTGCCATAAGTGAAATTAATTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAATCGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATGAAGTTGAAGTTGATATATCTTGGCTGACACCGCAAAGCGAATATCGCCCTACGGAGTATTTACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //