Array 1 15401-13065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMDY010000014.1 Streptococcus suis strain SSJ28 SSJ28_Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15400 32 100.0 34 ................................ ATGGTATAAAGAAAAACAAAAAAACCTTGAAATT 15334 32 100.0 34 ................................ AGTGAAGGGCAGTCGCAGTTGCAGCTATAGCAAG 15268 32 100.0 33 ................................ CTATGCAACCTGGTGGATTCGTCAGGCTATCAC 15203 32 100.0 35 ................................ AACCACTGTGGAACACCTTGAAAGCTCCTTAGAAG 15136 32 100.0 33 ................................ AAGCAACTTTTGAACCAGCCCATTAAGGTCTAA 15071 32 100.0 34 ................................ CGTCCTGTGAAGGCTTGGTACATTTCAAATTCAG 15005 32 100.0 34 ................................ AAGAAAGGTACTCGCTCCGTTCTATCTGGATAAG 14939 32 100.0 34 ................................ AACTGATGTAGCGTTCGGAACACCTACTGGATTG 14873 32 100.0 32 ................................ ATCACTTGATGATAGAATTTTCAACGGTTTAT 14809 32 100.0 36 ................................ ATCTTTTATAGTATTATCATTTCTTGGATTTGAAAT 14741 32 100.0 35 ................................ AAGAAGACTGTCATTCAATCAACCAACGAATTACC 14674 32 100.0 34 ................................ TTTAATGGTCATCCCAACTCCTCCAACGCTACCC 14608 32 100.0 34 ................................ TTCCCTGCATCTTTCCGCAAAGTGATTGCATCTT 14542 32 100.0 33 ................................ CAGTTGCCAAAAGCACTCGAGCTCATATGCAAA 14477 32 100.0 33 ................................ AAAATATGGGGACTTATCGTTCCAAGCCTTATC 14412 32 100.0 33 ................................ TAATATCAGACGTGCCTGAGATTCTGCGCTTGC 14347 32 100.0 35 ................................ TTTGATGTCGCTAGAAGTATAGGCGCCTGCACGAA 14280 32 100.0 35 ................................ TAAATACTCTAAAGACCAAAGTGTAGAAACTCTAC 14213 32 100.0 34 ................................ CCGCAAAATATAAGATACCGTTTAAATCACTGCG 14147 32 100.0 34 ................................ CGGGAGGGTCTGTAGAGGCAACTGGTGGGTATTA 14081 32 100.0 33 ................................ GATTTCAATTTGCAATTCCTCTGCAGTCAAATC 14016 32 100.0 33 ................................ TGGTGCCAGCTATTGCTAGTCAAGGTTGGTGCT 13951 32 100.0 34 ................................ TAACTCGACTTGCAACCATCTCGCAAATCGTGGC 13885 32 100.0 34 ................................ TTCCTGTACACGGTCGGGAAGACAGGTCTGCGAT 13819 32 100.0 34 ................................ TCGAGATTTACAACCAGCTCGAACCAACTAGACA 13753 32 100.0 33 ................................ ATCTCAATGAATGATACTAAAATTCTTCCTTAT 13688 32 100.0 33 ................................ TACTGCATACTCCAATGCTGCCTTAATGTTTTC 13623 32 96.9 34 ....T........................... AAATGGACTAAAGCTGATTTTGATGCTCTTGTGG 13557 32 100.0 34 ................................ AGTAAGTTGATTCATATCAATTCTCCTTCTTCAA 13491 32 100.0 33 ................................ TAATATCATCAAATGCCGACTTATCGCCAAAAC 13426 32 100.0 34 ................................ TGGGAAAGCTGTTTGAACATACTCATCAACTTTT 13360 32 100.0 34 ................................ AGAATGGCATCATCTGAGGAAGGTGGTTGTTCCT 13294 32 100.0 33 ................................ TTAGTCGTCATTTCCTCGGACAGTTTTGTCACG 13229 32 100.0 35 ................................ AAAGTAAGTATTTTACTATTAAAAATCAAAAAACG 13162 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 13096 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.2 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTGAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATAAAAAGTAAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTTGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTCGCGGTCAACAGTAAGGACTGTATCTGGATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //