Array 1 18371-20025 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLB01000011.1 Akkermansia muciniphila strain GP28 scaf-11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 18371 31 100.0 33 ............................... TTTGCTCTGGCGCGGTTTGCCGACGTAAGTGTT 18435 31 100.0 34 ............................... CACAGCTACCTTGCCCTTTTTGGTGGTGGCGACG 18500 31 100.0 34 ............................... GACGTGATTAACCCCTACACCTACAAACAACCGC 18565 31 100.0 34 ............................... TTCTATCTATCAAAAAGCCGTTCTCCGACCTCAT 18630 31 100.0 33 ............................... AAGGGAAGCCCTATATATTGTACCCTTATACCC 18694 31 100.0 34 ............................... GGCTTTGACCGTTTGCGGAGTGTCCAGGGTCATG 18759 31 100.0 34 ............................... GGTCATGACTGTATTCTGGCACAAAAAAGGCCGC 18824 31 100.0 34 ............................... ATTGTCTCGGTCTTTCTAATTCGGTTTTTTGTTT 18889 31 100.0 34 ............................... TTTTTTGTTTGAGGGAGATTTTTCTTAGAGACAG 18954 31 100.0 33 ............................... CTGGACCAGCCGGAAAGCTCAAAAGAAACACCG 19018 31 100.0 34 ............................... TGTTTCTAACATTTCATCCACGCTGGAAAACATG 19083 31 100.0 34 ............................... TTCTTGTTGGCTTCCGTCACGCCCTGGGCATTGC 19148 31 100.0 34 ............................... CGGCAGTCGGTCATCAGGGCGGAAATGCGTGTCT 19213 31 100.0 35 ............................... TCTTTTTTTGTAAGAGTTGTTCGAAAAATAGGCAA 19279 31 100.0 35 ............................... AATCAATTTACTGTTATCATCCGCAAGAATGCTTC 19345 31 100.0 34 ............................... CCGGTTTCCACGCGCACGGTATTGTTGAACTGGG 19410 31 100.0 34 ............................... CGCAAGAAGGAATCCATCGACGGATTCCAGAACC 19475 31 100.0 34 ............................... TTCAAGTCAATCTGCTCCCATTTCAGCGTCGCCA 19540 31 100.0 33 ............................... CCTTCCCGCCCCAGGTCAATAGTCATGTCGCTC 19604 31 100.0 34 ............................... TTCAATCATGGTCAGGGCATACGTTAAATCTTCC 19669 31 100.0 34 ............................... TAATTATTGTAATGACAAGGGGATGCCCTCGTCA 19734 31 100.0 35 ............................... TTCTCCGCACAGCGGACATCTAGGTGTTTTCATTG 19800 31 100.0 34 ............................... AGGGCGCCGAGAGGTGCCTGAGGGGTAAAAGCCC 19865 31 100.0 34 ............................... TGCCACAGGAGGTATTTTTAACGGGAAACTGGTG 19930 31 100.0 34 ............................... ACCTTACCCAGCGCGGTAAAGACTTGCTGTTTAT 19995 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 26 31 99.6 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : TGTCGTAGATTGAACGACCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28497-31296 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLB01000011.1 Akkermansia muciniphila strain GP28 scaf-11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 28497 33 100.0 34 ................................. GTCATAACGGTTCGGGTCCAGATACGCCCCGGCG 28564 33 100.0 35 ................................. CATGCTTTTTACGCTCCGTGGCCCTCCCCGCCCTG 28632 33 100.0 35 ................................. GGGTCATTCCGCACCCTGGACGATACGGTGATAGG 28700 33 100.0 38 ................................. CAAGTGCGCTTGCAGAAAGATACGGAGGGAGCCATCAC 28771 33 100.0 34 ................................. GGGTGCCATCCTTCCGCGCGGCCGGCGTTGTCGG 28838 33 100.0 35 ................................. ATCAAATGCCCGCAGACGTCGCAGACGTGTATGAT 28906 33 100.0 36 ................................. CGTGAAGGAAGTGAAAGGAGGTGCGGCATGATGACC 28975 33 100.0 34 ................................. CTCAAATTGCCGTTGCCAGGAAGAAGACAGTGAT 29042 33 100.0 34 ................................. CTGGATGCCATGCTGGATGCGTGCCGGGAGACGT 29109 33 100.0 34 ................................. TCTTTCCGCCTCTCCAATCAGCCAAAACATATTG 29176 33 100.0 33 ................................. GGGTCGTTGTTCTGCGTGGCATATCCGGTAAAA 29242 33 100.0 34 ................................. CGACTGGGCATCACTCCCGGAAAAAGACCTCCGG 29309 33 100.0 34 ................................. TATGTATTACTTTATGTTGCGGGAGTCGGTAGGG 29376 33 100.0 35 ................................. CACGGGATCAGCATTTTGTCATCGCTGATCTGCAG 29444 33 100.0 34 ................................. AGGATTCCGGTCTCTACCATGAATGTCCCTCTCA 29511 33 100.0 35 ................................. CTCGTAGCTCAAGGCGCCGGACGCGACTTTCGCGG 29579 33 100.0 34 ................................. GTTGAATGGACTCCGCGCGGACTGAAGATGCTCG 29646 33 100.0 34 ................................. GTTGTTGACGCGCAGGGCGTCTTTCAGGATGCCG 29713 33 100.0 37 ................................. ATGTTTGAGCTTCCGATTATTTGATTTGTTCAAACCG 29783 33 100.0 35 ................................. AACAAGACGGAGATCCGCACGCCGGAGGGAGGCTT 29851 33 100.0 33 ................................. AGGTTGTGTTTTCGGTTGGTCCCTTACCTCCCG 29917 33 100.0 34 ................................. AACAGGCCTTTGGGCAGTTGGCCTCCGCCATGTT 29984 33 100.0 34 ................................. CTCGAACAGATAGAAGAGGCGGTAAGTTAGTACC 30051 33 100.0 34 ................................. TGTAAAAACAACCTAATATTTAGCAAATCGCTTT 30118 33 100.0 34 ................................. TTATTTGTGGGTGTGAAACCTGTAAACTGGTATG 30185 33 100.0 35 ................................. ATGAATAATGAGTCGGAATATTTTTACATATTTCC 30253 33 100.0 35 ................................. CAAAGGTTTTTGTATCAACACGACAAAGAAGTTAT 30321 33 100.0 35 ................................. TCTTTGTTGCGACAACAAATAAAGCTAGAATGCTC 30389 33 100.0 33 ................................. TGGTACAAGCCGCCTCTGGTGACGCTCGAACCG 30455 33 100.0 35 ................................. GCCTTGCGGGCCTCTTCGCTGAAACATACCGACCG 30523 33 100.0 33 ................................. GTTCCTCACATTAATATATATATACATTCTCCG 30589 33 100.0 35 ................................. TGGCCGCCTTTTTCAGCGGGACAATTTCCAGGGGC 30657 33 100.0 34 ................................. GGTTTTCCGCAGCTCCCATTTCTTTTCCTCCGAC 30724 33 100.0 33 ................................. TGGGCAATCTCCGGTAACTTCATAAACCGGAGT 30790 33 100.0 35 ................................. GTAAACGGTTGACTTTGAGAAAAATAAACTCTTGA 30858 33 100.0 35 ................................. CAGTTCTTCCGCATCGTTTTCCAGAGCTTTATCCC 30926 33 100.0 35 ................................. GGCAAGCCCATCATGGACGCCCTCAAGCCCCTGCT 30994 33 100.0 35 ................................. ATTATGCCCTCCAAGAGAAGCCTTTTTTACGCCTC 31062 33 100.0 35 ................................. GGCGGGGGTCAGCCGGTAAGATTTTTCTCGGGCCT 31130 33 100.0 34 ................................. TCGGCATACCTTCTGACCCCGTAGCCGTCTATGC 31197 33 100.0 34 ................................. TACAGGTTCTCCGGAAGCGTCATCATCCGGTATG 31264 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 42 33 99.9 35 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : AAGAAAAAGTTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 98708-98343 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLB01000011.1 Akkermansia muciniphila strain GP28 scaf-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 98707 34 100.0 32 .................................. ATCACCTCCGCCTATGTGTCCAACCTGTCCAG 98641 34 100.0 32 .................................. ATGACGTAGAAGGGAGGGCGGCATGAGAACCC 98575 34 100.0 32 .................................. ATTAACCTATCCGTGCATGTCCGGTTGCCCAA 98509 34 100.0 32 .................................. ATTAAAGCCCGGTAGCAGTCAGGGATGGGTCA 98443 34 100.0 33 .................................. CATTCGAACTGCGTCGGGGAGTCTTCCTTGTAC 98376 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================= ================== 6 34 100.0 32 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGTATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : CATAGATAATGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //