Array 1 56418-58038 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSY01000007.1 Streptococcus anginosus strain OUP25 oup25.s5-trimmed-pair1.paired_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56418 36 100.0 30 .................................... GAACCTCATCCTCAAGAACTGACTGCACCT 56484 36 100.0 30 .................................... TAATAAAGATACTCAAAATTCATGGTCTTT 56550 36 100.0 30 .................................... TTGAAAATTTTCAAGGTATTTTTATTATGG 56616 36 100.0 30 .................................... TGATAGTATTTTGTTCATTTAGAATAGAAC 56682 36 100.0 30 .................................... TGTAAACGCTCAATTTGCTAGAATAGATAT 56748 36 100.0 30 .................................... GGCTTTTTTCAAAGGGTTTTGTAAAAAGAA 56814 36 100.0 30 .................................... CTAGGGCTTTAGCACCAATCTTACGAGAAG 56880 36 100.0 30 .................................... ATGATTAAAAAAACGCTCGGCTTGCTAGAA 56946 36 100.0 30 .................................... CCTCGTTTTCGTCTAAGTATCCGTGCTTAG 57012 36 100.0 30 .................................... ACGTGCTCATACTTATGTTTGGTATGAAGT 57078 36 100.0 30 .................................... CATTATTTCCAACAACTGCAACTTTGTTTC 57144 36 100.0 30 .................................... GTCAATGACTTTTAAATATGGCGGTTTAAG 57210 36 100.0 30 .................................... ACCAGAAGCCGTTAAAGTTTCATTATGTTT 57276 36 100.0 30 .................................... TTATGCACCAAAACAAAGCGTCCAGTTTGA 57342 36 100.0 30 .................................... CTGATACAGCGTGACTATGAGATACAAAAT 57408 36 100.0 30 .................................... CGAGCTCAAGGCATTACTTACGCTGTAATT 57474 36 100.0 30 .................................... CAGCAACTGGTCCATATAATAATGTGGTTA 57540 36 100.0 30 .................................... AACGCAAGCAAAACAGGCAGGGTTTGGAAA 57606 36 100.0 30 .................................... CGTAGCACATTCGTAAAACTGCCCTTTCAA 57672 36 100.0 30 .................................... ATGACAGTTGCCCAGCAACATCAGTATACG 57738 36 100.0 30 .................................... AGAGCTGGATTGAACTCAATTGGTACGATA 57804 36 100.0 31 .................................... AATTGGGGAAAGCTGGCTCTTTGGATGTTAA 57871 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 57937 36 100.0 30 .................................... CGTGGTCACTACATCAGCTAGTGTCAATAA 58003 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20619-21088 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSY01000005.1 Streptococcus anginosus strain OUP25 oup25.s5-trimmed-pair1.paired_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 20619 37 100.0 35 ..................................... ATAATTTGTTTCATGATATCCTTCTTTCTGTCAAA 20691 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 20761 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 20833 37 100.0 36 ..................................... TTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTG 20906 37 100.0 35 ..................................... ATTGCAGACTTCACATGTGTCTAATTCTTCGTCTG 20978 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 21051 37 86.5 0 ..............................TTTTT.. | T [21086] ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.1 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : ATTCGTTGTTTTGAAACGGAGAATCATGAGGAATTTTTAAGTGGTTATACGACGGGAGAGTAATGATGGGATTTTTTTACAACTTAGATGAGGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGTCTTGTTGTCTATGATATCATCAGCAATAAGCGGCGCCTCAAACTTTCTAAATTGTTGGAAGGATATGGTAGGAGAGTCCAACGTTCTTGTTTTGAAATTGATGTTGAAAAAACAAATTATAATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGG # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 29788-30394 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSY01000005.1 Streptococcus anginosus strain OUP25 oup25.s5-trimmed-pair1.paired_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 29788 37 100.0 33 ..................................... TGATTTGTTCTTGTTCTTCATTTAATAGCATTT 29858 37 100.0 37 ..................................... CTTCTTGTTTGTTCATTTTATTCCTCCCACATTTTCA 29932 37 100.0 35 ..................................... TTACAGCATCGTCGTAACAAGTTACAGGTTTTTTT 30004 37 100.0 34 ..................................... CCAGTTGGTTTTAAGTATTGCGATGCATAAACCA 30075 37 100.0 34 ..................................... GCAAACGGCTTAGGTTGTGAGTATAACTTTCTCG 30146 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 30216 37 100.0 36 ..................................... GCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA 30289 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 30359 36 89.2 0 ..........C....................-A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.8 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : TAGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //