Array 1 367354-368724 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYQD01000002.1 Salmonella enterica strain BCW_4843 NODE_2_length_547751_cov_3.08807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367354 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 367415 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 367476 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 367537 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 367598 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 367659 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 367720 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 367781 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 367842 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 367903 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 367964 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 368025 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 368086 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 368147 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368209 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368270 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368331 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368392 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368453 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368514 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368575 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 368636 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 368697 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384857-385967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYQD01000002.1 Salmonella enterica strain BCW_4843 NODE_2_length_547751_cov_3.08807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 384857 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 384918 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 384980 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385041 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385102 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385163 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385224 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385286 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 385347 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [385389] 385389 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385450 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385511 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 385572 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 385633 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 385694 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 385755 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 385816 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 385877 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 385938 29 96.6 0 A............................ | A [385964] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //