Array 1 63880-64112 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFMN01000002.1 Ligilactobacillus salivarius NIAS840 84_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 63880 35 100.0 31 ................................... ATTTGATTGCACTATCGAACTCATCACGTCG 63946 35 100.0 31 ................................... TATCCTAAGAGTAATTGGAGTCCACTCGAAG 64012 35 97.1 31 ...................T............... GGATCTCCCAAGCGAAGGAATCGAAGGCACG 64078 35 88.6 0 ....G.G............T.......C....... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 96.4 31 TCTTACACCTATGTCAATTCAACTAGGTTCAGAAC # Left flank : CTTTCAATACGTTTGTAAACTTCTTTGCTTTGTTTATTTTTAGGTAAAGCTTGAACTTCATCTAATTCACTAACTGGCTTATAAACTTCAGCTAGTAACGCATTCCACATTTTGATGTTAGCAAACATATTAAACGTTAAGTATGCTTGTTGTTCTTTAGTAGGATAAATTCTAATTCTACGACTTTCTAAAACTTTTTCTTCCATTTTTTCCAACTCCTTTTTTGAGTTAACATGTAATTTACGCATAGTCTTTTGGCTGACTACACCTAACGCTAACCCTTCCACAATGGACGTCTTTATTTGTGCCATCAGCACTTTTTGGGAACTCTTCAACAAAGAAATGCAATTAGCAACACTTTGTTTGCGAAGATGTTTACCAAACTGTGAAGAGCAAGCACCCTCCAATAACGATGGTAGGAATCGAACCTACGTCGCCTCGCTTTGCTCTACCATTGAGCTACATCGTTGTTTTGACTTTAATTAAGCCCATGATTTCAT # Right flank : CCATTGTTTTCTAACCTATATTTAATTGTGACATAAGCTTCTTGGGAACTCCCCATGCTTGCGATGCCTTACTGTTAGTTTAACCAACAACACCGTAGAGGCTAGAGATATTAGCCAAGCTGTCGAGAACAAGCGTCCTCCTATTAGCATTAGCGGAGTCGAACCACTATTAAAGTAACCGTACATGCCAACCTACAATAAACATAAAGGAGATGCAGGCTAAATTCCTGCGATAGACACAATGTACGCAGGGGTTAAGAAGAAACCCCCTATTAGCACTGGTAGAATCGAACCACCATTAAGCAACCATACGTGCCAACCTTGAGTAAATCATTCAGTACAATCACACCGCCGCCACGAACCCTAGATGGCGGCAGTCTTACACCTATGTCAATTCAACTAGGTTCAGAACCCTAACCTATATTTAATTGTGACACAAGTTTCTTGGGAACTCTTCTTACTTACAATGTTGCTAACTAAGTAATCTAAGTTGCAACACT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTACACCTATGTCAATTCAACTAGGTTCAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 65147-64846 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFMN01000002.1 Ligilactobacillus salivarius NIAS840 84_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 65146 37 100.0 29 ..................................... ATCTGATACGTTTATCACTATTAGTCAAG 65080 37 100.0 29 ..................................... CGTGGTTATGATGTAGTGATTTCAAAGTA 65014 37 100.0 29 ..................................... TATATTGCTCAATTTAATCATCTCCTTTC 64948 37 89.2 29 A.............G.T..A................. CAGAAGAACAATTAAAAAGCCTTAGACGA 64882 37 97.3 0 ........G............................ | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 97.3 29 GGTTCTGAACCTAGTTGAATTGACATAGGTGTAAGAC # Left flank : CTAGCGAAAAACAGTTAAGGCTCCTTAATGTTTGTTTTGCTGTGTAAAAGAAAGCTACACTTAGGGTTACCTAGGCTTGTGGCTTTTTTTATTTTTCAACTTTTTTGAATTTTATTTTAAAAAAGTATACAAAAACATTTGACTTAGGGTGCGAGATAGTGTATCATAATAAACGTAAGGCAAAGGGTTAAGCCTACAGGGACATCAGTAAACTACATGTAAGCCTCTATCGTTCCTGTAAGCATTAGCACAACCCTTATAATCTTAACTTTATCTTTATTCGTTATGTACATTTTGGTGTAGCGGTGTAGCTCAACGGTAGAGCAATCAAGTGGGTTCGACTCCTGCCATCGCTATTGGAGGACGCTTGTTCTCGACAGCTTGGTTAATATCTTTAGCCTCTACAGTGTCGCAATTAAAATTACTTAGTTAGCGCCATTGCAAGTAAGAAGAGTTCCCAAGAAACTTATGTCACAATTAAATATAGGTTAGAAAATAAC # Right flank : TTATCATAACTTAGCAAATATAAGCATTTTGGAATAAAAGTTAGTTCGATTCTAGCTATGCTAATAGGGAGTGTAATAATACTCCCATGTATGAGTGGTTATGTAACAAACTCCTTTTCTATAAAGTTACTTATGAGGCTAGTACATACGGTTATCTTGTAGTGGTTCGATTCCACTAGTGCTAATAGGAGGACGCTTGTTCTCGACAGCTTGGTTAATATTTTTAGCCTCTACAGTGTTGCAACTTAGATTACTTAGTTAGCAACATTGTAAGTAAGAAGAGTTCCCAAGAAACTTGTGTCACAATTAAATATAGGTTAGGGTTCTGAACCTAGTTGAATTGACATAGGTGTAAGACTGCCGCCATCTAGGGTTCGTGGCGGCGGTGTGATTGTACTGAATGATTTACTCAAGGTTGGCACGTATGGTTGCTTAATGGTGGTTCGATTCTACCAGTGCTAATAGGGGGTTTCTTCTTAACCCCTGCGTACATTGTGTCT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCTGAACCTAGTTGAATTGACATAGGTGTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1288057-1287439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFMN01000001.1 Ligilactobacillus salivarius NIAS840 84_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1288056 36 83.3 36 AGA..........T....T..........C...... AAATGGTACTGATGTAACAAATCAATACAACATTGT A [1288050] 1287983 36 100.0 36 .................................... AAAACTACTGCATATAATCCTGGTAAAAAAGAAACG 1287911 36 100.0 37 .................................... GTTTCATTCATACGGTCGATATACTCCAGATTTTCTT 1287838 36 100.0 38 .................................... CTTTAATTATAGAGTAACGTTAGATAAAGGAGAGTATA 1287764 36 100.0 38 .................................... TGGGTTTAGACTTTATACCTATAGACCTTGACGAGGTG 1287690 36 100.0 36 .................................... ATCAAGGAAAATGCAATCCAGATTACAATAAAAATT 1287618 36 100.0 35 .................................... GGGAATAAACATGAGTTATGACTATTCAAAATTAT 1287547 36 100.0 37 .................................... ACATATGAACCGTTACTAATATAAGCCCATCCTGTTT 1287474 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 98.1 37 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCATGCTCAGAATATATTAATAATATTTTTTTTGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTTTCTTGTCTACTTTAATTAAATT # Right flank : ATGCCTTGATCAATTAGTTGATGTATCAACAACTATTGGCATCTTTAATGGTACCCTAAACAGGCAATAGGTTAAATTAATGAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTGTTTCTTACAGCAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCCTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAGTATAAAGTAATTGCACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCCCTAGTAGAATTTTGTCTCACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAACTTCTTATGATATTTAGTTGCTTCTTTTCTATTCTCCTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACTTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //