Array 1 599244-598986 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 599243 36 100.0 39 .................................... CTCGGGGGGAAGGGCCCCCTCGTAGCCGAACACCACCTC 599168 36 100.0 38 .................................... GCGTGCGGGCCAATCGTGTCCCGCACGTTCTCCATCGC 599094 36 100.0 37 .................................... CAACAGTGATGCAGCAGCCCAATGACTGTCATGATTA 599021 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : GCCGCTTCCTGGAGGAGGTAGCCCACCCCTTGGGCTTCCGCAAACCCCTGGGGGAGATGATAGAGCTCCAGGCCCAGCGCCTGAAGGCCGCCCTTTTGGAACGGGGGCACTACACGCCCTTTTACCTTTGGCGATAAGGCGGGCCTTTACTATACTTGTCAGCAAAATTACGATGCAACTGGCCCTTCTTGCGCTTTGAAAATCAAAGCCCCTTTGCCAGGCCGCCTTTTGGCCCATATTTTGACCTGGTTCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTCTTCCCTTGGGGATGGGCAATATGCGTTTTCTCCTTCTCATCGGCCCTCTCTCCTGCGTGTGTTCATCGGCATAAACCCCCGAAAATCCCCGTTATTCGTCCCATGCATATTCCAAGCTTCATCTTTCTCACAAACCCCTCTCTGGCAGCGCCGTCCAGAACGGCGTTCTTAGGGGGGTAAA # Right flank : TGCCGGGTGTTTCGGATAGTCTAGACCCATGGCAAAACGCCTTTACGCTGTGGCGTATGACATCCCCGACGACACCCGCAGGATTAAGCTGGCCAATCTGCTCAAAAGCTATGGGGAGCGGGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAAAAGCTCTTAGAGGACCTGCGCGCCCGGGCGAGGCGGCTTTTGGACCTGGGCCAGGACGCCCTGCGCATCTATCCCGTGGCGGGGAGGGTGGAGGTCTTGGGGGTGGGGCCGCTTCCGTCCCCTCGGGAGCTCGCCGTGGTCTAGGGCGTGTGCCAACGCCACATCCTCTTGGCCCAAGAGAGGGGCCTTCCCGGGCATCAAGCCCCCCCGGCTTGGCCCCTGGGCCAAGGTGTGCTACAATCCCTCAAGGCGGGGGCCGTTAGCTCAACTGGCAGAGCACCGGTCTCCAAAACCGGGGGTTGGAGGTTCGAGTCCTTCACGGCCCGCCAGATGGCCCCTCTGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 1033997-1033418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1033996 29 96.6 32 ....................A........ CCCGGGCCGCCGAGCTGGCCCGGCGGGCGTTC 1033935 29 93.1 32 ....................A.......A GCTCCACCACGTGCTCCTGGCCATCGTAGCGG 1033874 29 93.1 32 ....................A.......A GGTGGGCCCCAGCTGCCGGGCCCACCCCCTGA 1033813 29 100.0 32 ............................. CGTGTCCAGGACCGCCATAGCCACCTGGGGGT 1033752 29 96.6 33 ............................A GGGGGTCCAGGACGCGCTGGTAGCCGCCAGGGT 1033690 29 96.6 32 ............................T CCGTTACCCTCTCCCCATACGGTGTAATAAGC 1033629 29 100.0 32 ............................. GCTCTGGTGAACGCCCTTGCGGCGGTGCCCAC 1033568 29 100.0 32 ............................. CTTGGCCAGGTCCTCGGGGGAGTTCACCCCGG 1033507 29 100.0 32 ............................. AGGAGGCGGGAGACCTCCCGGAGGCCGTAGGA 1033446 29 72.4 0 ...........A.G........C.TTTTT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 94.8 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GTGGCCCTGGTGGCCACCCTGGGAAGCCTCTACTACTCCGAGGTGCGGCTTTTCCTGCCCTGCGAGCTCTGCTGGTACCAGCGCATCTTCATGTACCCGCAGGCCGTCATCCTGGGCCTGGCCCTGTGGCGGCAGGACTTTGGGGTCTGGCCCTACAGCCTGGCCCTTTCCCTGATCGGGGGGAGCATCAGCACCCTGCATCTCCTGGAGCAGAAGTTCCCCAACCTCTTCACCCTGGCCTGCAAGCCCCCGGTGCCCTGCTCCGTGGAGTACATACCCCAGTTTCCCATCCCCCTTCAGGCCCTCATCGCCTTCGCCCTCATCGCCCTCAGCATGGCCCTTCTCGCCCGGGAAGCCCGTGTGGTAAGATGACCCAAGCGCCCCACCCTCACCCCTTCCCCCGGCGCGGCGGAACTTGAAAACCCCTTCCCGGAACTTCTCCCGAAAAGATACATAACGGGGGGTAAGCGGGTATTTTCGCCGTCCTGGTCAAGTGTAGT # Right flank : TTATGGGGTGTACCCCAAGGCCTCCAACACCGCCTTGGCCCGGAAGTCCAGAAGGGTCTCCGGGCCGTGGACCTCGAGGACCCTCTCCCTCACCCCCCGCTCCACCGGGGCCAGGGCCAGGAGGGCGTGGAAGGGTTGGAGAACGTCCAGGGGAAGCCTGCCCCCGGCGAAGATGACCAGGTCCGCCTTGAGGGCTAAGGCGCCCACCTCCTCGGGCCTCAGGGCCACGTGCCCCCGGGCCCTTTCGGGCAGGCGGGCCAGGAAGCTATCCCCCTCGGCGAAGCTCCCCGCCCCCACGGAAACCTGGCCAAGGGCCCGGAGGAAGGGGGCGAGGCCCAGGCGCAAGGGGCCAAGCCAAAGGGCTTTGGACCCCGGGAAGAAGGCGGAAAGGAGCCGGTCCAAAGCGAGCCCCTCCGTGTAATGCCCCACGAGCCCCAAGGCCCCCGGCACCACCAGGTCCACCAGGCCCGCCCGCTCCGCCTCGGCCTCGAGGCGCATCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : GTAGTCCCCACGCACGTGGGAATGGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1252768-1253100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1252768 36 100.0 44 .................................... GTTACGAGTGAGGATGTATACCCGCACGTCCCCGGTCTCTACGT 1252848 36 100.0 37 .................................... AGCTCTTGGACGGCCCACTTGATGGCCCCGACAAAAG 1252921 36 100.0 32 .................................... CCGGTGATGGTCCCGGACCCATTCGGCCACGC 1252989 36 100.0 40 .................................... ATTGTGATGTTCCACGCTGGGCTAAACCCCAACGCTTGCA 1253065 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 5 36 100.0 38 GTTGCAAGCCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : TATACCCACCCTGAACCGGGCCGTGTGATGTTTGCACACGCCGTGGTCCTCGCCGCCTTCCGAAGGGGGCACCTCACCCCGGCCCACGCCGAAGCCAGGGCAAAGAAGCGTGCACGCCGCAATACTTACGCATCCACTAGTTACTTCCACCATCTGCCTTGTTACGGGGCGAAGCCATCTCTTCACGCTTCCGTAGCGTATAGTAACCTTCTTTACGCCTCTCCCGACAAACTTTTGTACTTGGTACACCGTTGCCCGAAAGTGCTATAATGTCCATGTCCCGGGCATCCGGGAGGGGACCTTGAAAACCAGTTTCTTCCCACGGGGACGGCGATATTCGCCTATGCATTCTCCCTTGACCCCTCTTCCGAAGTCTTCCCATCGGCCTAAACCCCGCAAAACGCCCACCCTTTGGCCGATGTATATTCCAAGGTTCATCTTTCTCACAAACACCCCCTCCGGCGGTGCCGTCTAGAAGGGCATTCTTAGGGGGGTAGAGT # Right flank : CCCCTCTCCTGCCCGGTGGGGCGGGGGAGGGGTTTCGCTTTTGGGGTGGGCTGGTTTCTTGACCGGGTACAGGAAGGCGGGTAGAATGCCCTCCGGAGGTAGAAGAATGAAGCGGCTTATCGCTTTGGTGGTGGTGCTGGCCCTGGCGTTGGCCCAGGGGTTGGAGGCCTTCTGGAAGGCGGTGGAGGTGCCGGGTGGGGTGTGCTCGGACGGCTCCCCCTACCGCTTCTACGTGAGCCCCGGGGACCCCAAGAAGGTGGTCCTGGACTTCCAGGGTGGCGGGGCCTGCTGGGACGCCGCCACCTGCGGCCCGCAAAGCCAGACCTACCGCAAGCGGGTGGACGCGCAGGAGCTCCTCCTGGCCCAGGGCATTTACAACCGCATGAGCGTGGCCAACCCCTTCTTCGGCTGGACCCACGTCTTCGTGCCCTACTGCACGGGGGACCTGCACGTGGGCCGGGCCACGGTGGACTACGGCGGCTTCAAGGTCCACCACCAGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 4 1438302-1438938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1438302 36 100.0 40 .................................... GCCGCACCCGCAAAAGGGGTCCAGGACCACGTCCCCGGGG 1438378 36 100.0 37 .................................... ACCTGTTCTTCAAGTTTGGCCACCCGCTTTTTGAGCG 1438451 36 100.0 39 .................................... CTTCGCTTATGGCATCCCACACCCACGAGGGAGGCACTA 1438526 36 100.0 39 .................................... CACCCCTCGCCATCCTCGCCCATGTAAAGCTCTACCTTC 1438601 36 100.0 39 .................................... CCGCTAGGCCACGCCTTGAGGGTAGCGACCACCTTGCGA 1438676 36 100.0 42 .................................... CACTGGCCGTTTTCAATCCGACCAGTGTACACTACAGGTTCT 1438754 36 97.2 37 ............C....................... CAGGGTGTAGGTAAACTTGCCCACGCGCGCGGTGTAG 1438827 36 97.2 40 ............C....................... AACCGGCGGGTAGCCTCCTCCAGGGCCATGAGGACCACCT 1438903 36 91.7 0 ............T........G............G. | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 98.5 39 GTTGCAAACCACGTAGCCCCGTAAGGGGATTGCGAC # Left flank : CCTAGGCCTTTTCAGGGCAACGCCTTGAGAAGCTTCCGGGGAGCGGGCCTCCGCTCCCCGCTTTCCCTTGGCCGGGAAAGCCCCGGGTCCACCTCCTGGGGTTGGCCCAAGGGCGTGCCCCTTCCGCCTCTGGCGGCGGAAGGGCCTTTACTACACTTGTCAGCAAAATTACGATGCAACTGGCTTTTCTTGCGCTTTGAAAATCAAAGCCCCCTTTCCAGGCCGCCTTTTGGCCCATATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTCTTCCCTTGGGGATGGGCAATATGCGTTTCCCCTTCTCATCGGCCCTCTCTCCTGCGTGTGTTCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCCCATGCATATTCCAAGCTTCATCTTTCTCACAAACCTCCCTCTGACAGTGCCGTCCAGAAGGGCATTCTTATAGGGGTAGA # Right flank : CACCACCATGGCGCTACTGGAGCACCCCCGGGGTCCTGCCAGGGGTTTTTCCTTGTCGCCCTATAATGCCCCTATGCGCCTTCTTTTCATCGGCGACGTGATGGCGGAGCCCGGCCTCAGGGCCGTGAGCCTGCACCTGCCGGACATCCGCGACCGCTACGACCTGGTCATCGCCAACGGGGAGAACGCCGCCAAAGGTAAGGGCCTGGACAAGAGGAGCTACCGCCTCCTGCGGGAGGCGGGGGTGGACCTCATCTCCCTGGGCAACCACGCCTGGGACCACAAGGAGGTCTACGAGCTTTTGGAAAAAGAGCCCGTGGTGCGGGCCCTCAACTACCCCCCGGGGACGCCGGGGAAGGGCTTTTGGCGCCTCGAGACCGGCGAGAGCCTCCTCTTCGTCCAGGTGATGGGCCGCATCTTCATGGACCCCCTGGACGACCCCTTCCGGGCCCTGGACGCCCTTCTGGAAAGGGAGAAGGCGGACTACGTGCTGGTGGAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACGTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAACCACCTAGCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 5 1579592-1578039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1579591 29 100.0 32 ............................. GGGGGCTCGCCACTCAGGCCCGCTAAATCTCC 1579530 29 96.6 32 ............................T GTAGGAGGTGGAAGATGCGCAGGATTTTGGTG 1579469 29 100.0 32 ............................. GAGTTCAGGAAGCAACTGGCCGAACTCCAGGA 1579408 29 100.0 32 ............................. GAGAAGCGTGCTCTTCCCGTGCTGCGGCGGAG 1579347 29 100.0 32 ............................. TTGCCGTAGTCCAGGGGCGTGCCCCGGGTGGA 1579286 29 100.0 32 ............................. GTATCCTCGTCTTCTTGGACGATGGGGTACCC 1579225 29 100.0 32 ............................. ACGGCGTGGGCCTTCAAGCTGACGAGCTTCTT 1579164 29 100.0 31 ............................. AGGCACTTCCCCTAGACGCTTCTTCTCCCCC 1579104 29 100.0 32 ............................. TGGGGCGTGGCGGACCCTGGGGCCCTCTTCGC 1579043 29 100.0 32 ............................. TCAACACTCGTCGCGGCCAACGCGCGAATCAC 1578982 29 100.0 32 ............................. TTCCTTGTTTTGTCTCCAAAGGACTACGCCGC 1578921 29 100.0 32 ............................. GCCGCCCGGAAGGCCGGGGTGTGGCCCAAGCG 1578860 29 100.0 31 ............................. ACCTCAGAGAGAGGCATCCCCCGAGCGTGCC 1578800 29 100.0 31 ............................. TGCTCCGGGAACTGGGGTTTTACATGCCCAA 1578740 29 100.0 32 ............................. CGGGCCGAAGCCTGGCGGGGCCTCTATGAGGG 1578679 29 100.0 32 ............................. TTCGGAGACGTCCCGGTCGTGGTGGGTGCCCC 1578618 29 100.0 33 ............................. GCCTTGTGGGAGCCCTTTGGCCATGCCGTCCAC 1578556 29 100.0 32 ............................. CCCCCCGACTTCTCCCAGGGCTTTGAGCAGGG 1578495 29 100.0 32 ............................. TAGCTCGTAAAGTCCGGCCAGGGCATCGGGGT 1578434 29 100.0 31 ............................. GCCTCCTGGTCCCCGAAGCGCTCAGGGTCCA 1578374 29 100.0 32 ............................. GCCCGCAGGAAGGCCAGCATCTTCGGGGAGGC 1578313 29 89.7 32 ...........A.C..............C AGTACGAGGCCGCCCAGCGCCAATACGAGGAA 1578252 29 93.1 33 ...........A.C............... GTTTTCGTGGCCACTAGCGATCGTTCTCTCCAT 1578190 29 93.1 33 ...........A.C............... CACGTGGAGGTGGCCAAGCGCCTCCAGGAAAGC 1578128 29 100.0 32 ............................. ACGTGCGCCTCCTTACCCGGGAAGAGGCCGCC 1578067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : CTATGGGGTGGAGGGGAGGGGGAAGGTCCCGGATAACGTAGACTCCCCGGCGGAGGCGCTCCACAGGCTGGCCGAGGGCTTTGAGGGCCTCGAGGTCCCGCTCCACGGTGCGCTCGCTCACGCCGAAGCGCCGCGCGAGCTCCGTCACCCGGTAGGGCCGGAGCTTCAGGAGGTCGGCCAGCGCAAGCAGTCGGGCGCTCTTGGCCTCCTGTCCCATGGAAAAAGCTTAAGTGCACTCCCCTCAGACTTGCAACTCCACTCCTTCAGAAGTCCTTCAGAGCCCGGACCACCGCCCTCTTAGGCTCTTGAAGGCTCGCGGGACTGTTAAAGCCGGCTTCCAGGGTTGCCGTGCCAAGCCTGACCATGCTAGGCTAGAGGTAGCCTCTTCTTTCCTCAGACCTACGCCTCGAGGCTGTGGAGCTTGACAAGCTTACCTGCACTATCTCCCGGAAAGACACATAACGGGGGGCGAGAGGGTATTTTTGCCGTCCTGGTCAAGT # Right flank : GAGGGCCAGCCTCAGCCTGAGCCTCGGGAGGGGATGGCCCGTAGCGCATAGCACCTCTTGGGCTGGGTGGGAGCCTCCCCCAGCCAGCCTTCCCACCCCCTGCCGGCGCCGGGGCCAGGCCCTGGAGTGTGAGGCGGGACACTTGTCCCTTACCTCCGGACGTGCTAACCTAACAAGCGATCGTTAGGTATGGACCGCCGCAGCCAAATCCTCCAGATGGCCGGGCACCTCTTCAGCCAGCGGGGCTACCACGCCACCAGCATCCGGGACCTGGCCAAGGCCCTGAACCTCCAGGGGGGAAGCCTCTACGCCCACATTGCCTCCAAGGAGGAGCTCCTTTTAGAGGTGGTGCGCCAGGCGGCGGCCCGCTTCCAGGAGGTCCTAAACAGCCTGCCCCAGGCGGGGCCCAAGGAGAAGATGGTGGCCCTGGTGAAGGGCCACCTCAGGGTCATCGCCGAGGAGCTTCCCCGGGCCACGGTCTTCTTCCACGAGTGGAAGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1589440-1590628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHCI01000106.1 Thermus aquaticus strain YT-1 jcf7180000008185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1589440 29 100.0 32 ............................. GTCTTCTGTAGTTTTGGGGCCCGTGTCTAAGA 1589501 29 100.0 32 ............................. TGGCCTATAATGTGGCTAATGTGGAGGTGGCC 1589562 29 100.0 31 ............................. GTGCGGAACCCTAAGGGCGAATGGCCCTCCA 1589622 29 100.0 32 ............................. GCAGGGATCAGCCGTGTTGATCGTCACTCACA 1589683 29 100.0 31 ............................. AGCTGGAGCCAGGGGAGTATGTGGGGCAGAT 1589743 29 100.0 31 ............................. CTCTTCTTGGTCAGGCAGGACCTCGTAGTCA 1589803 29 100.0 32 ............................. TAACCAAGGGCGTGGTCCAGGCTATGGCCGGG 1589864 29 100.0 33 ............................. GGCTACCGGGAGGAGCTAGAAAAACTCCTGAAC 1589926 29 100.0 31 ............................. AACCCGAACTCACTGAGGAGGTGCTAGATGG 1589986 29 100.0 32 ............................. GAGACATATATACACACTCGAGCGGCCATATA 1590047 29 100.0 32 ............................. GCCGACTCCAGGATGCAGGCGGCGGCGTTGGC 1590108 29 100.0 33 ............................. GATTACGCCGCCCTGCTCACCTCGCCGAACCTG 1590170 29 100.0 32 ............................. GCAACCCGACAACGCCTGTCGGGAACCCGGGC 1590231 29 100.0 33 ............................. AATAGGGGCCTCCTCCTCAAGGAGGGCCTTGAC 1590293 29 100.0 33 ............................. GACGAGTGGGGGCTCCTGGAGTGATGCCTACGG 1590355 29 100.0 33 ............................. ATCGGCTTCTGGGCCCGCCAGACGGGCAAATCC 1590417 29 100.0 32 ............................. AGGTAGGCCGTTATGTCTCCAAAACGTCCTCC 1590478 29 100.0 32 ............................. GCCACATATGGACGGGTGGGCACCAGGGCCGC 1590539 29 96.6 32 .........................A... TTTCGCGGGGTTTTTAGCGGGGTGCGCAGGGG 1590600 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GGACCCAACCCGTCCTGGGGGCCTTTGGGACCTCGAGGGGGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAAGAGCCTTAGGGGGGACCTCACCCGCTTCCTGGTGGAGGTGGACACCGGGGTCTTCGTGGGTCGGGTTAGCGCCACGGTGCGGGAACTCCTCTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCAGGGTGGCCCTCGCCTACCGTACCAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGATCGCTTCCTGCGGGACTTTGATGGTATAGTGTTGGTGGGCGTTCGGAACGCCGAGGCGGCGCGGAAGGCGGAGAAGTTGTCCAGGCAAGTTGAGAGGTACAAAAAGCGCCTCGCCAAGGCTTCCGAAGGGGATCTTGAAAACCAAAAACCGTAATCATTCCCTAAAAGACACATAACGGGGGGTGAAGCGGCATTTTTGCCGTCCTGGTCAAGT # Right flank : GGAGGGCCAGGGGTGCCCGAGGGGCGAGACCACCCGGCCGTGGTAGCCCTCGCCCTGACCGCCTGGGCTAGGTGGGAGCTGTGGCGGGCCTACCAAGCTTGAGGTAAGATGAGGGCACGATGGCTAAGGGCCTGGTCTTCAAGTCCAAGAAGGCGGCGGAAGTCTTCAGGATCGTCCAGTCTATGCCTCCCCTTACGGATGAGGATGCCAGGAAGATGGTGGAGGCCATAGAGCGAGTAACCGGACGCCGCCACCCTTTGCGCAAGGTTAGGCGCAAGAATGAGGCCGCCGAAGCGCCTTCTTCTTGACACCAACTTCTTCATTGCCCTCCGGCGCGGCGAGCCGGAGGCTTATCGTTTTCTTGCTAGGCTAAGCGAGGAGCAACTGGTAACTTCGGCCATCGTTCAGGTTGAGTACGCCACCGGAGAGTTTGTTGTTGACCCAAGGCGGGAAAGAAGTGTGGAGGCCATGTTCGCGCGGTTTGCCGTCTTGCCCTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //