Array 1 2487985-2487418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047495.1 Pectobacterium brasiliense strain 1692 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2487984 28 100.0 32 ............................ GCATTATTCACCGCTGGCAACCACTGTATTCT 2487924 28 100.0 32 ............................ GTTACCCCGTCTATGCAATTTCAGGATCAAGA 2487864 28 100.0 32 ............................ GATGCGGTTGCGCTGGGTATGGCGACTGATGC 2487804 28 100.0 32 ............................ ACGTTGATTCCTGATGGATTTGCGCCGCGAAA 2487744 28 100.0 32 ............................ CATTAGCTCTGATGATTCATCGGATAGGTCGA 2487684 28 100.0 32 ............................ ATACCCCGTGTGATTAAGAACATCTTGATATC 2487624 28 100.0 32 ............................ GGCAAGACGCTTTGCTCTAACCATTCCTGCAT 2487564 28 100.0 32 ............................ TAACGACTTCAGTGACCGGCCGAATGACACGC 2487504 28 100.0 32 ............................ GCGATGATGACGAAAAGATAATGAGGAATAAA 2487444 27 92.9 0 .......................-..T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTCGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAATCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACAGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTATAGAACATGGCCCGTTACAGGATGCTCCTGTCGCAGGACGCTTTTCCTCCTATGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGTTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : CTATCGAAATGCGTCGCTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2496558-2497425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047495.1 Pectobacterium brasiliense strain 1692 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2496558 28 100.0 32 ............................ GAAAACGGCAGGCCGAAATCAGAAAAAAGCCA 2496618 28 100.0 32 ............................ GCAGCGTCAATAAACTCGCGGGCCATCTCTTT 2496678 28 100.0 32 ............................ GATAGCGTAAATGCCATCCGGTCACAGTTGCT 2496738 28 100.0 32 ............................ GCCGTTCGCCTCGTCGTTGACCGTGAGCGAGA 2496798 28 100.0 32 ............................ ATGCCCGCGCTTGTCGCAGCTTCTCGAACATA 2496858 28 100.0 32 ............................ GTTGAAGCTGGCGAGTTTGAAAAGAAGCAAGC 2496918 28 100.0 32 ............................ ATGCGAAAACGTGGCGGAAGATAAAGAAAATT 2496978 28 100.0 32 ............................ TTGCTCACTAGCCATTTTAATTGCGTCAGCAA 2497038 28 100.0 32 ............................ TCGGAATTTATTAGAGCCATTAAATTTAATAA 2497098 28 100.0 33 ............................ GTTAAAGCTGGATGACGGGAATTGAATGTAGGT 2497159 28 100.0 32 ............................ ACCCGCGGCTTTGATGTTCAACAGCGCCCACA 2497219 28 100.0 32 ............................ CTTACTGAGATAAAAAAAGGCGATAATATAAT 2497279 28 96.4 32 ...........C................ TATTGATGACGTCAATGTTTGCCTCTTGAATC 2497339 28 96.4 31 ...........C................ CGCGTCGGCGGGATTTTTTTGCAGGAAGAAA 2497398 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTTACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAGTAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACAAGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGTGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTGACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //