Array 1 103161-101302 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJN01000009.1 Escherichia coli strain EC_22 NODE_9_length_172688_cov_11.743029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103160 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 103099 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 103038 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 102977 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 102916 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 102855 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 102794 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 102733 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 102672 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 102611 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 102550 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 102489 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 102428 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 102367 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 102306 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 102245 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 102184 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 102123 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 102062 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 102001 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 101940 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 101879 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 101818 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 101757 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 101696 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 101635 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 101574 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 101513 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 101452 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 101391 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 101330 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129804-128860 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJN01000009.1 Escherichia coli strain EC_22 NODE_9_length_172688_cov_11.743029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129803 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 129742 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 129681 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 129620 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 129559 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 129498 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 129437 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 129376 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 129315 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 129254 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 129193 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 129132 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 129071 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 129010 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 128949 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 128888 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //