Array 1 2253-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000209.1 Paracoccus thiocyanatus strain SST NODE_209_length_2277_cov_15.287258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2252 29 100.0 32 ............................. GTGAGGGTTTTTCCCGACCCCCGCCCCCCCTT C [2243] 2190 29 100.0 32 ............................. AGGCTAAGGAATGGTGCGAAAAGCAAGACTGG 2129 29 100.0 32 ............................. TACATCACCAGCATCACCGGAGGCGAACAGCC 2068 29 100.0 32 ............................. TATCGGGATCGGCGTAGTTCTCGGTAGCCTCG 2007 29 100.0 32 ............................. TGGTTCGAATATGACGGCGAAGGTTGGCAGCG 1946 29 100.0 32 ............................. TCGAGCGCCGGCGGAACGATCAGTCGGTCGGG 1885 29 96.6 32 ............................T TTCAGGTCCACGGCATAGGAGCCCCGGAACCG 1824 29 96.6 32 ............................T GCATCAAAGCGCGGACAGGTGGCGTCGGGCTC 1763 29 100.0 32 ............................. TGCCCTGGCCGATCAAAGCGCCTGATATGGAT 1702 29 100.0 32 ............................. CGCACCATGCGACTGATTTTGCGGATCTAAAT 1641 29 100.0 32 ............................. GTCCGACCAATGCACCCGCGTCGATGTGGGCG 1580 29 100.0 32 ............................. CTGGACAGCTGGCTGATGGTGGACTGCCCGGC 1519 29 100.0 32 ............................. CACGCAGACCCCGCAGAAGCCAATGCCTAGAA 1458 29 96.6 32 ............................T CCGCGAAGCAATGGTCGAGGCGGCCGAGCGGT 1397 29 100.0 32 ............................. TGGCGTGAACTGGCCAAGACCATGGATTCGCA 1336 29 100.0 32 ............................. GAGCATATGGAGGGCGCGCGATGAGTGACAAT 1275 29 100.0 32 ............................. GACACCTGGCCGGTGTTGGGGTTATATTGCAG 1214 29 100.0 32 ............................. ATGTCCTTCCGCGCGGCTTCCCGGTCTTTCCA 1153 29 100.0 32 ............................. CTGCCGGCGGTGCTGTCATCCACCGTCTGCGC 1092 29 100.0 32 ............................. TGGCTCGGCTGAAAGGCGCGCAAGCCGCATTG 1031 29 100.0 32 ............................. ATCGGGTTCCAGTTCCGGGATTTCGCAAGCCG 970 29 100.0 32 ............................. TGCGCGGACCAGAACCTGTCGGGTTCGGTCAG 909 29 100.0 32 ............................. TCGTTCCGCCAGTCCTTGGCCTCGGGGTCCCA 848 29 100.0 32 ............................. TCGATGCGACACGGTCTTATCTTCAGAAAGAC 787 29 100.0 32 ............................. ACGCGGTTGCGCTCGCCAGTGTCCCAGTTGCC 726 29 100.0 32 ............................. CTTTTTTTTGGGCCTGACGGGCTTGATGGGCT 665 29 100.0 32 ............................. AGAATGTTTTCGCCGAAATGGATGCGAAAGCG 604 29 100.0 32 ............................. CTTTCCTCGTTGCTCATACCAGCCTCCCGGAA 543 29 100.0 32 ............................. TTGGGGATGCGGGTGTCAGGACACCCATTCGG 482 29 100.0 32 ............................. CAGCCGACCTGCGAGACGAACAGAATGTTTTC 421 29 100.0 32 ............................. CCGGCCACGGACAGGTCCAATTCCGGCCCCTC 360 29 100.0 32 ............................. GGTGAGCGCACGGCGCTGACTGATCTAGAAAG 299 29 96.6 32 ............................T TGTGCTAGCGGTGGTGGCCGCGCTTGGATTGG 238 29 100.0 32 ............................. GATTGCGTAGACGAGACGCGGCGCATGGCCGA 177 29 100.0 32 ............................. CCGCCCATCGAGCTGTGGAACGACGCGGTTTT 116 29 100.0 32 ............................. CTCGTGAAGCGATGGGGGCCGCCGCCTTCGAA 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.6 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : TGTTGCCGTGCCATATAGCAATCC # Right flank : CTGGCGGCTGATCGACTCCGACCCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 1585-2589 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000202.1 Paracoccus thiocyanatus strain SST NODE_202_length_2611_cov_113.846635, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1585 29 96.6 32 .A........................... TTGGCGGGGAAGTCGTTAAGGCGGTTGGCGAT 1646 29 100.0 32 ............................. CAAGACTGGCGTGATTGATCAGCAGTTTCCAA 1707 29 100.0 32 ............................. GCGGTTCTTGGTCCGGTCTCCGCTGCGAATAG 1768 29 100.0 32 ............................. TTTACAATCGCAGCATTCCGGGACACCTATTG 1829 29 100.0 32 ............................. GGGAAATTGAACAGGAGGTTTACCTTGGCTAG 1890 29 100.0 32 ............................. GGCGCAAGGGCAACAATCGCGGATGGGCGGAA 1951 29 100.0 32 ............................. TGGAGGATATTATGAAGTCTTGTGGACTGGGT 2012 29 100.0 32 ............................. ATTTCAGCCTGTCCTACTATTCGCCGGACGTA 2073 29 100.0 32 ............................. CTACTCTGCTGCGGGGACCGCTAAGCTTCCGT 2134 29 100.0 32 ............................. CGGGAACAGCTACTACAACGATGGCTGGTATG 2195 29 100.0 32 ............................. TACCTGTCCGTCATCAGCGGGATTGCCGGGCT 2256 29 100.0 32 ............................. TCCATCGCTTGCCGTCCCAGCCGCGCGGCCCT 2317 29 100.0 32 ............................. CTGTGCCCCGGAATAACATCTGTCCTAGAGAA 2378 29 100.0 32 ............................. CTTAGACTTAGCGTCTTCCAGTTCCGCAGTCA 2439 29 100.0 32 ............................. ATCGGAGATTGGTAGCATCAACAAGCTGCTGT 2500 29 100.0 32 ............................. TAGGGTTGTGCCGCTGCCCATATAGCAATCCA 2561 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : CAAGGCGGCCCGCGACGTGATGGCCGCCCCTGCCGAGAACATCGAGCGCGTGACACGGCGCATGACCGGCCGTGCGATCACGGCCGAGGGGCTGATCCCAAGCATGATCGAGCGCATCAAGGCGCTGGTCGAGGGCCGCGGCTGATGGCGCTGACCATCATCGTGACCCGCGACGTCGAGGCGCGCTATCGCGGCTTCCTGACCTCGGTGATGCTGGAGATTTCTCCGGGGGTTTACGTGGCCCCGAACATGAGCGCGGCGGTCCGCGCCCGCGTCTGGGAGGTGGTGTCCGGCTGGTGGCACAGCCTGGGGCGCGGCGCGCTGGTCCTGGTCTGGCGCGACAAGGCCGCGACAGGTCATCTGCGCATCGAGACGCTCGGCGAGCCCCCGAAAGAGATCGTGGACGCGGATGGTGTTTTGCTCGTAAAACGATAGTAGACGGCAGAAATTTCGCGTATTTGCTTTTTGATAATCGAATGATATGAGGGCATTGCCTCCGA # Right flank : CTGCCGGCGGTGCTGTCATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 816-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000261.1 Paracoccus thiocyanatus strain SST NODE_261_length_840_cov_12.284076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 815 29 100.0 32 ............................. GGCGACCTGGGCCTATCGACCAGCTATGCCGG 754 29 100.0 32 ............................. TGGAGCAACATCAACATTGCCAGCCCCTCGCA 693 29 100.0 32 ............................. TTCTTCACATTCCCCTCGGCCAGCACGCGGCC 632 29 100.0 32 ............................. GCCGCGGCGATGCAAGAGGCGCAGTTCGGCAA 571 29 100.0 33 ............................. CGCCCGTCCACATGCTCCGTAAGGTCCATGCTG 509 29 100.0 32 ............................. GCCCTGATCCAGCAAGAACTGATAGTTCTGCA 448 29 100.0 32 ............................. TGCATTCATCCGCGGATACAACCGCGGATGAA 387 29 100.0 33 ............................. CACGCACCGATGGGCACGGCGACCGGCGCGGTG 325 29 100.0 32 ............................. TACCCAACAGATATTCCGATACCTGACGGTAT 264 29 100.0 32 ............................. AGCGGCAGCATGTGCCAGTAAGATGCAGGGCG 203 29 100.0 32 ............................. CGGCCGGCGGCTGGCGGGGCGACTGGGCCTAT 142 29 100.0 32 ............................. GTCGAGACAGCAAAGACCGCCGGCATCTTCAA 81 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : CGATGCCTTATTCGCTGGACAGCC # Right flank : CGAGCCGCTGCACGATTGCCGATGCCCCGAGCTGGCTCCCCCCGCACCCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 41-618 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000111.1 Paracoccus thiocyanatus strain SST NODE_111_length_9575_cov_173.414706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. TGCCTGGCCGCAACGGCGAAAGCCGCTTTGTC 102 29 100.0 32 ............................. TCATTTGCTGGACTCCTTGATCATGAAGGAAT 163 29 100.0 32 ............................. CGGCCTTCCGCAGGCGGCGCGACCAGTTCTCG 224 29 100.0 32 ............................. TCATCTATCGCGACCGGGTACAGGACTGGATC 285 29 100.0 32 ............................. GATGCCGTCGAGCGCCGGGATACCGGACTTCA 346 29 100.0 32 ............................. GGGGACAGCCAGATCATATCCATGGAGGGTCG 407 29 100.0 32 ............................. GCCGGTGTTCGACTGCGCGCAGGTCAGCAGGT 468 29 96.6 32 ..................A.......... GGACAGGTCTTTCCCGTGTGCAAGGCCGCGCA 529 29 96.6 32 ............................G TTCCAGTAGGTCGGGCTGGTGGCCTTAACGCA 590 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : ATAGACCCCCCGCCTGCGCCGGCCTGCGCCTTGTCGGGCGG # Right flank : CCAGATCCCGACCTTGAAGCGGAGTTTGATCCGGTTACATTGGCTCTATTGCGGCCTCGAACCCGAACCTGCTACATATCCCGGAACCCAACCGGAGGATGAAATGAAACCGGCCCTGCTTCTGTCCCTGCTCCTAGCAACGCCGGCAACAGCATGTCCAGTAAAGGTAGGTGAGGTAGTCTTGCCCGATGACCCTCAACAAATACTCTCTCAGATCCCGGCGTTTCGAGCCAGGAAGGATCAGTTCGAGTCAACCGAAGAATATGCAGCACGTTGGACGAAGCAAAACCAGGCACTGAATAGGATTCAGTTCACATTTAAGGAGTGGAACCCTCTAGGTGCATTTCACCTAAACTACGACGCAGATAAAGGAGCCTGGAAAACACCTCGCATAATCCCCAAGTCCTCCCTCTCCAAAGTCGGAACTCTATTTTCCCTAAATACTCGATGAGTATGACGATCGCATCTATCGTCTCGGATCGATCAGAGTATTTAGCTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1512-1844 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000111.1 Paracoccus thiocyanatus strain SST NODE_111_length_9575_cov_173.414706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1512 28 93.1 32 .................-..........A GCATTGATCGCCTGATCGCGCTGCTCCATCAA 1572 29 100.0 32 ............................. AAGCGCAAGCGGCTCGCCTCGATCCCGGTCAC 1633 29 100.0 32 ............................. GAAAATGGACATGAAATTCCGTGGACTCGTTT 1694 29 100.0 32 ............................. AGATCAGCTTCGGCCCCGAGCTTCAGGCAGCG 1755 29 100.0 32 ............................. CTGGCCGGTGTCAACCTGGCCGGTGCCGATCT 1816 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : ATCCCCAAGTCCTCCCTCTCCAAAGTCGGAACTCTATTTTCCCTAAATACTCGATGAGTATGACGATCGCATCTATCGTCTCGGATCGATCAGAGTATTTAGCTTCTACGGATTTTGGGGTCACGAAGCAGGTTGAAGCAAAAACTTATAATATTCTTGAGGTCTTTACCCCAGCGTCGAGCTCCGATCTATTCCCAGAGGGAGTCATGATACCTATGTCTCCTGACGACGCAAAAAGGATGAATGGGAGAATCCTTCCCGCTTTTATGGGGTATCTTCAAGCCCCCGGTATTATTCATGACCATGAGAGAGTAGAGCCTACACTTGACAATCCGGCCGATCTTGAGTTCAAGATCATGGGTATTTCTGCCGTCATACAGTGTGGGCTTTTCCTCGACCCAAACAATAAAGTCCTCGCGGTTTTCGAGCCTAACCCAAGCGTCAGTCAGAAAATGGGCCGCCCTTAACGGGCGACCCTCCTCACAGCCCCGACCCAAAGC # Right flank : CGCGGACCGCATCCGCGGCCGCCCTAGCGGCAGTCGCGCCTGCGGCCTCTGATCATCGCCGCTTTTGGCGGACAGGTTGCCCGCCCCCCGATGCCGCAAGGCAGGCTGGCTGCAAAGCGAAAAGCCCCGCCGAATCAGCAGGGCTTTCTTTATAGTCGACCCGCGCCATCAGGACGCGGCAGGGATTCAGGCCTTTGCCAGGTCGCGCTTGATCTTCAGGGCGCGGTCGGACAGTTCCACATCCTTGGCCTTGGCAAGAAAGGCATCCAGCCCGCCCCGATGGTCGACCGAACGCAGCGCCGCGGCCGAGATACGCAACTGGAAGCTGCGGCCCAGCTTTTCCGACAGCAGCGAGACTTCGTTCAGGTTCGGCAGAAACCGGCGACGGGTCTTGTTGTTGGCGTGGGACACGTTGTTGCCGCTCATCGGGCCCTTGCCGGTCAGTTCGCAAACGCGCGACATGATCTTGTTCCTTCGATTCGATCCTGCACGGGCGTCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 790-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000262.1 Paracoccus thiocyanatus strain SST NODE_262_length_827_cov_10.861399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 789 29 100.0 32 ............................. CTATCGCCTGGGCTGGTCGGAACAGTGCAAGG C [780] 727 29 100.0 32 ............................. GAGATGCACCTCTGCCCGCTGCAATACGACAT 666 29 96.6 32 ............................G CCGTGGCAGGGTGCGGACGAACCGGCCCACAC 605 29 96.6 32 ............................T TTGCCATGCGCCAGCGAACCGGCCTTCGATGC 544 29 100.0 32 ............................. TGCCAGCACATTGCAATCGACCAGATCAGGAG 483 29 100.0 33 ............................. GCGAGCTTCTGACGGCCGGATCGCTGATGGTGG 421 29 100.0 32 ............................. TTCAGAAGTTGCATGATCGTCAGCTTGCGCCC 360 29 100.0 32 ............................. GCGGTAAATGCGGCACATCACGTCGTCTCGGA 299 29 100.0 32 ............................. TGGCCAATCGTAGCCCCGCCTGCGGTGAACGA 238 29 100.0 32 ............................. AGGTCCAGCACCCTCATCCCCTCGCCCCCACG 177 29 100.0 32 ............................. GCGGCCATCCTCGGCGCATATTTCGCCCGTGA 116 29 100.0 32 ............................. CTGGAAGGCGACCGACACATCCCGGCCCGATC 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : AGACCCGATTGCGTAGACGAGACGCGGCGCATGGCCG # Right flank : CTGGCGGCTGATCGACTCCGACCCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 398-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000276.1 Paracoccus thiocyanatus strain SST NODE_276_length_397_cov_5.304094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 397 29 100.0 33 ............................. TGGCGGCTGATCGACTCCGACCCCGCAAGCTAA 335 29 93.1 32 ..................A.........T GGGCTGGATAGGTCGGGGCGAAGTGGCGTTCG 274 29 100.0 32 ............................. CGCTCGCGGGACGTGTTCATCATGCAGTCGGA 213 29 100.0 32 ............................. GCGGCCATGGACGCCGCCTATGAGCCGGGCGC 152 29 100.0 32 ............................. GGCCGACCTAAACGCGCGGCTGCGGGTCAAGG 91 29 100.0 32 ............................. CTCGACACGATGCCTTATTCGCTGGACAGCCC 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : | # Right flank : CG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 351-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFCQ01000277.1 Paracoccus thiocyanatus strain SST NODE_277_length_375_cov_27.312500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 350 29 100.0 32 ............................. GCGGTTCCCTACACGTCCATGCGCAAGGGCGA 289 29 100.0 32 ............................. TCGCCCGGAAGCGCAGTCTTCACGCCGCCATA 228 29 100.0 32 ............................. TTGGCGTCGATGCCGAGAATCAGATGCGCACG 167 29 100.0 32 ............................. GACTACCGCGATCTGCGAGACAGCATCGTCGG 106 29 100.0 32 ............................. GCTGGCCCACGTCATTCCTCGTCCCCCATCCG 45 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : CGATGCCTTATTCGCTGGACAGCC # Right flank : CGCGGACCTCATCCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //