Array 1 288826-288129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIM01000006.1 Alkalihalobacillus lehensis strain G25-134 G25-134_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 288825 32 100.0 33 ................................ TGAAAGCTATTGAAAATAACATCGGTGGCGCAG 288760 32 100.0 36 ................................ ACCTTGTCCCGTCGCGGTAAGCGGATAACGTGTGCC 288692 32 100.0 35 ................................ CCATAATTCCATCTAACATAATGACATTCATTATC 288625 32 100.0 35 ................................ TCCGCCGCCTGACGCCTCTTGTAGCGCTTTTAACA 288558 32 100.0 33 ................................ AAGAGCCAAATTATCAGCGCGCCCCCGCTGCGG 288493 32 100.0 35 ................................ AGTTTTAGGAAACATGCTCGGAGCAAACCCGTAGC 288426 32 100.0 34 ................................ ATGTCCAACGCTTCCTCTGCGTGTCTGTATAATT 288360 32 100.0 33 ................................ ATCCAAAATTAGAAACTTTAACCAAGTTATCTA 288295 32 100.0 35 ................................ CCAGCAAATTTAGCGCGATTAAAAATCGGGTCACT 288228 32 100.0 36 ................................ ATCATTCTCAGCATCTTCGAATCCTGTAATATTTAA 288160 32 75.0 0 ..........C..GA.....A..A...C.T.C | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 35 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTATGTAGAAGATGCACGTTTGTCTAACTTAATGAGATAAAGCAAATTATTATTATTATCTAGTGAATGTTATTGAATAAAAGTATTACTTCTTACCGTTCTAAAAAATGGTCGCTGTTCATCAATTGCGCGCCATATGACCTTTTTACAATTAGACAAACTCTATTAAATTTATGCAGGAAGATCATTTATCAGAGGTCAAACAATAGATTTTTATTGTATGAAAAAAGGAAATCGGTGAATTTATTAGAACAATTAATAAAGAACCAATTCCAAGTCACAAGTATAAAGAGACTATCTTCATTTAGGAGAACCTTTTTTGAAAGTAACTTCATAATTGGTGCGAACCCAAAGCGAACATAAAAACCCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTAGCTGAAAAATCTTACCTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT # Right flank : TGCAGAAATTGAGGGAATATGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGTTAGTGAAATGTGTGAGTCTGCAGCTTAAGCGCCCTTTAATAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGCTCGGCCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAGGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATACATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGAGTTCATAAGCAGTTCTCGAAGGAAGACTTTGCTGTTATAGCGAAATCAATCGGATATTTTAACGGAACGTACG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 294149-293580 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIM01000006.1 Alkalihalobacillus lehensis strain G25-134 G25-134_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 294148 32 100.0 35 ................................ TTTCGTCTCAAGCGCTGACCAGACGTGTGTGCCTT 294081 32 100.0 34 ................................ TCCAATTATCCGCATTTTGTGCTCTTGGCTCGTC 294015 32 100.0 34 ................................ ATTACGCTTCAAAAGATAGTGCTGATAGTTCACA 293949 32 100.0 33 ................................ TTTACGACGGCTGAGGGAAGCGATCTTCTTCCC 293884 32 100.0 36 ................................ TAGAGCTAAGAGGAACGTTTGATGGTGCTGCTCCTT 293816 32 100.0 35 ................................ ATAATATCACAATTCAATTCAACTGGTAAGTTTTT 293749 32 100.0 37 ................................ AATTTTTGCTTTTTTCCCAACATTCGATTGTCTAAAT 293680 32 100.0 37 ................................ TTTTTGATAACGCATATTTAAGCAAGTACCTATAACA 293611 32 78.1 0 ........T..........T..A...AA.G.G | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 97.6 35 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTAAGTACTTACAAACCCGCTGAAATAGTGTATTGGAAAAGCGAAGAAAAAAATAGAGATTTGTTAAATAATAAATTAAGTGACAAAGCTAATTCTGTTAGAAAACAACTACTCGAAATAACAAGCATAAATCTTGAATTGAAAGATTTGATCTCCTATCCAAAGATAAAAGGAACAAAAAATGACAATAGAATAAACGCCAAAGCCTCTCATCAATGGTTTACGAAAAATAGGAAATTGGTTGAAAAAAATAAAAAGAAAAACCTTCCTACAATATCGCAGGAACTAGATAATAAGCAGGAAAATAAACATTTAAAAAAGTTATAAAGCAAACATGCTAGGTGCGAACCCCAAGCAAACATAAAATCCCTAGGGGACTCGCACCACTTTTTTGAGGGAATGTGTAAAAATATGTGCTATATTTGCGAGGAAGTTGCTGTTCATCAGTTGATTTATAGTGATATGTAGTAGGAAAGTGCTTTTTTTAGCCAATTTTCGCT # Right flank : CCGAAAGTTGCCAAATAGATTTAGAGGAAAAATAAGCGTATGTGCTCCGGTGAATGAAGTCGATTCGACTTTCTGACACTCGTAGCAATGGAGATGAGACCGATGGCGAATGACAAACTATTAAAAAGACAGACCGATAAGAAAGCAGAATCTAGTATTTTTTTCAATCTCTAATAATTTTTCGGTAACGTCCATAGAAAAAGTGATAGCGGAGATCAAAGGAAGTTGTAAGGAGTCGAACAGAATGAACAAAAGCAAGCTATTGCTGGTGGTTGTTCTTGCCATCATGTTAGGAGGATGTGGCCAAATGGGTAGCTCTTCAGGAGAAGAAACAGAAAAAACACCAGCGGAAATGGACCCGGCAGATTTGCCGCAAATTGATGCGTTTCAAAGCGAACATTCTCGTGAACTGATGGTGTCGACAGATCCAGTAGCGGAAGGGTTTTACTTAATGCGTTCAAAAATTGACGCCTTTACGATTTGGTTTCCAGAAGAGGCTG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 314218-312994 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIM01000006.1 Alkalihalobacillus lehensis strain G25-134 G25-134_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 314217 32 100.0 33 ................................ AACTACACCTTTATGCATTTCTTCTGCTGCGGT 314152 32 100.0 34 ................................ TGCACATTTTATTGAGGACGCAGCGGAACGTGTA 314086 32 100.0 33 ................................ ACCATATGTCTTATTTATGGATTCATAAATTCC 314021 32 100.0 36 ................................ ATAAGCTAGAACGTATAATTGGAACACATGAGTAAG 313953 32 100.0 36 ................................ ACTGTTATATGGGATGCTATATCCTGGGTAGGTCGT 313885 32 100.0 34 ................................ TAAAGAATCCTGCTGTTATTGCAAATAAAAACTG 313819 32 100.0 34 ................................ AATTGCGTTCAAGACTCGACCTTGTTCAAACGTT 313753 32 100.0 35 ................................ ATCATTCGGTTACCACGTTGTACAGCCGGAGCGTT 313686 32 100.0 35 ................................ AACGAAGAGGATTTTATAAAAGAACATGGGTTTGA 313619 32 100.0 34 ................................ TTGAAGGAAAAGGTCGTAAAGCAAGTGGTCAATT 313553 32 96.9 33 A............................... ATCTGGACCGCATGTTCCCTTTCGAATTTTATG 313488 32 96.9 35 A............................... TAAAATTGTTGGCTTCCAGCAATTTGGACCACCTC 313421 32 96.9 33 A............................... ATAAATGGTTTATACATTAATCACTTTACTACT 313356 32 96.9 36 A............................... TCGAAGCAAGCTCTTCGAAAAAAGAGAAAGAACAAT 313288 32 96.9 34 A............................... AAAGAGCGGGACTGGAAATGCGATAAACTATGCT 313222 32 96.9 34 A............................... TTCTATGTACTTTCTTTCTTCCTGAACCTGCCTG 313156 32 96.9 34 A............................... AACTCCTTTATTGGATTGTGTTCATCGTGAATAT 313090 32 96.9 34 A............................... TCTAATCATTCCATTGAAATGTCTTCTGCCGGGA 313024 31 87.5 0 A..........................-.T.G | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTAAACGGCGCATCGCACAGATGGCAAAGGAAGTAAAAGCGAACCCCCGTGCAGACGGAGTCGAGGAGATATTTTTACCAGGTGAACGCGAAGATAAGGAAAAGGCAAAGCGATTGAAAGAAGGCATCCCATTATCCGAAGCGGTAGTTAGTGAATTAGAAGAAGTTGCTGCCTATTATGGCGTGGCAATGGACCGTAATCTATTAAAAATGTGAGGGAAAGAGAAACAATAAAGAACCTCATAATTGTCCTGCTTCTTCGCTCATTAGCTTACGAGTTTGGCTGTTTGGGGAATGTCAAAAAAAATGAATGTGTAGTGAGTCGCCCTCTTCTTTTAATAGGTGCGAACCCGAAGCGAACATAAAATCCCTAGAAGACCCGCACCACTTTTTCGGATGAATGTGTGAGAATATGTAACGGATATGGAGCGTGGTTCTTTTTCTTATTCCATTTGTGTTACTATTTAATAGGAAAAGGTAGTTTAAAGCCTTTTTTCGCT # Right flank : AGTGCACGAATTAGAATGATGACCATAGCATCCTAGAAAATCGGACTATGTATCCCTCTCGCTATGTCTGTACTTGTAAATGTCTAGACAAAAACCCCCACTTTTAAAGTAGGGGTTTTCAAGTTTACAATCCAAACACAATTGGCATCCAGAAGTACACGGCTCCGGTAATGACGATAATAGAGACGATGTTGAGCCATACACCAGCTTTCGCCATGTCACCGACAGCGAGATAGCCTGCGCTAAATACAGCTGTATTCGGAGGTGTGGCGACTGGGAGCATATAACAGGAACCAGCAGCTAGTGCAGCGGCAGCCATAAGAGGTAGAGGATCAACACCTAAGGCAATACCGAGTCCGACAGTAAGTGGTAGAATTAAATTTGAAACGGCTGTATTCGAGAGAATTTCAGTAATCCCGAGTACAAATAAGACTAAAAGCAATAGGACAAAAATGTATTCCATCCCTTGAAGCATTTGTAGTAAATCTCCAATCGATTCA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //