Array 1 40-1829 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPE01000161.1 Micromonospora trujilloniae strain NBRC 110790 sequence161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 40 37 100.0 35 ..................................... GGGGAGCCGACCCCTCCCTTACAAGGGGGACAGAA 112 37 100.0 37 ..................................... TCGCGGCGGCGTACGTGGGTCGGATCCGGGCGACGCG 186 37 100.0 36 ..................................... CCGGAACGTCGTGTTGGCCTCGGCGTACAGCGCCGA 259 37 100.0 37 ..................................... TGGTGCGGCGTTCGGCGTCGACGACGTCGTCCCACTT 333 37 100.0 37 ..................................... TCAACTCCGACCGTCCGCGTATCGAGGTGGCCGGCTG 407 37 100.0 37 ..................................... ACCGGTCCCGTGCCCGCTTATCGGGGTCGAAGTAGAT 481 37 100.0 37 ..................................... CGGGGGTGGCCCGGGGCGCGTGCACACCCCGGGCCGG 555 37 100.0 36 ..................................... TTCGCGGCCGACTACCGGCGCGGTCACGGCACCGAC 628 37 100.0 37 ..................................... TCGGCGCGCTGCTCGCCGCCCTGCCCGGTCTACTGTG 702 37 100.0 36 ..................................... GCCGAGACCCGCGATCGGTCCGGCTGACTTCATCGG 775 37 100.0 37 ..................................... ACTTCATCGGGAAGGTCAGTCGCCGCGTGGCCGGGTA 849 37 100.0 35 ..................................... CCACGGTGACGCTGCCGGTCGACCACGCCGCCCGG 921 37 100.0 35 ..................................... TCGACCGGGTCAACAACCGCATCGCCCAGCCCTAC 993 37 100.0 38 ..................................... TTCGGACCGGGCAGCAGCACACCAACCAGCACCGAAGC 1068 37 100.0 37 ..................................... GGCTGCTCACCCGGACGGCAGTGCCGCTTACGGCCCT 1142 37 97.3 35 ........A............................ GCCCGCCCACCCCACAACAACACCGACTTCCCGAA 1214 37 100.0 35 ..................................... CCGACGATCTGCGCGGACGTTTCCTCATCGACGGA 1286 37 100.0 35 ..................................... AGGATGCGCATGCGCCCTTCGCCGCCAGCGGCGCG 1358 37 100.0 38 ..................................... TGGACGGTTTGGCGACCTGGTTGCGCGCCGAGTTCGAC 1433 37 100.0 34 ..................................... ATCAACACGCTCCGCGCCGAGGGCATGAAGACGG 1504 37 100.0 35 ..................................... CCGGTGCCGAACCGGGCCGACCGCAGGGCCAACCA 1576 37 100.0 34 ..................................... GGACGGCTTCGTCGATCGAGCCGGACGGCGATGG 1647 37 100.0 36 ..................................... CCGACCCACGATCGCCACCGGCTCCAACACCTCCGG 1720 37 100.0 36 ..................................... GATCGGCAGCGCAGATCATGATGCGGACCGCAGCAG 1793 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.9 36 GTTGAGATCCTCGCCGACGGCGAACCGCCAGCGCCGG # Left flank : GGGGCCACCGATGGTAGGTGGCCGCGCCGCAGCGTACCGG # Right flank : CGTCTCGGCATCTCGGTGAGCAGGGTGGCGGGCCACAAGGTTGAGATCCTCGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATCCTCGCCGACGGCGAACCGCCAGCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 7856-9409 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPE01000021.1 Micromonospora trujilloniae strain NBRC 110790 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7856 29 100.0 32 ............................. ATCACGGACCCGGCCACGGACAACCCGCCGGA 7917 29 100.0 32 ............................. GGTCCCGGGGTGCGTCGCGGCTGCGGGACTGG 7978 29 100.0 32 ............................. GGCCGGGGGTGACAGCACGGAGGCCAGGAGAG 8039 29 100.0 32 ............................. AGGCCTGTCGCGTTGCCGGATACGGCGTGGGC 8100 29 100.0 32 ............................. AGGCATACGGCCGGGCTAAGACCCTGACGGCG 8161 29 100.0 32 ............................. GTCGTCGAGTGGGGCGTCAAGCGCATCCACCC 8222 29 100.0 32 ............................. TGTTCGGCCCCATTGCGGAGCGGACCCGCTAT 8283 29 100.0 32 ............................. GGATGGACACACCAGGAGTGCTGGGGCTGGGT 8344 29 100.0 32 ............................. ACCAACCAGCCCGAGCAGGCCGAGCGGCCCGC 8405 29 100.0 32 ............................. GCGTCGCCGGAACGGGAACCATCACGTTCGTA C [8422] 8467 29 100.0 32 ............................. GTACCCGTCCCGGTAAACGTGTGGTGCCTATA 8528 29 96.6 32 ...................A......... TGTGCGTATATCCCGCGGCTTACTGTCAGTAG 8589 29 100.0 32 ............................. GCCGACGGCGACGGCGACCCGGTCGACCTGAC 8650 29 100.0 32 ............................. GGGCATACCCACACAGGACAGGGCAAGACAGG 8711 29 96.6 32 ............................G TCCCGGTCCGCCTCGGCCCGCGCTGCCCGGTC 8772 29 100.0 32 ............................. AGCAACGGCACCTACGGATGGGTGTGCGCCTG 8833 29 96.6 32 ............................G GCGGGAGGCGTTTCGCATCAGCGGGTCAGGTT 8894 29 100.0 32 ............................. ATCGACGCGTCCAACGCCTTGCGGATCAGTTC 8955 29 100.0 32 ............................. GATTGCGCCCACCCACTCAAGGGGGGTCACAT 9016 29 100.0 32 ............................. AGTCGGGTGGCCTTGGCCTGCCGGTGCAGCAG 9077 29 100.0 32 ............................. TGGGCAAGCCCTTCGACCCTGACCGGCTCGAC 9138 28 93.1 32 ..........T......-........... CCGGACGTGGCCCTCTGCGGCACTCCCGTCCC 9198 29 100.0 32 ............................. TGCTCCCGCTCCCACTGCCGGTTCTCGTCAGC 9259 29 96.6 32 .....................A....... CGGGCGACCCTGCTGTCACCTTCTACGCGTGC 9320 29 96.6 32 .........................C... GCGTCGGCATCGTGTTTCACTGCTGCCGCGCG 9381 29 82.8 0 .....G...........T..AA......G | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CGGCCCGCCGGGCTACCGGGTCGGTGCGGGCGTGGATCGTCGGGGTCCGCCACACGGCGGCAGCCTCGGCGAAGGTGGCCTTGTTGAACAGCCAGTCGCCGTCAGGCACGCCGCCATCCGTTCGCGGTCCGTGCGTACCTTCGCTGCCAGTCGGTCGGCTTCACGGCGGGCCTTCGCGGCGGCCTAGTCACGTTGGGCATGGCGTTCCCGAGCGGCGGCCTTGTTCTAAATACCGACGGCCGCCCAGCGGGCACCGGCCTCGCCGATGGTCGCCAGCCCAGGCTGGTGAAGCCGCTGCTGGGGCCTGCCGCAAGTGCTCGTGGGAGTCGGCGAGCCGGGCCAAGTCCATCACCAACGCGAGCACGGCGATTCGCCGGGTACGCTGCTTCCACGTCAGCGGTCACCGGCCGCCCATGTAACGTCGGTCCGAAGGGGTGATCTTGCAAACCAAAGTGAATGAAATCGGAGTAGTTGATCTATAGCGCCGCAGGTCAAGAAGT # Right flank : GCAGCGCCCGACAATTTATATCTCCCGGGAGCCCTGCCCCGAGCATGCGAGAGGTGATCCCGAGCAGCGCCAGTCCCAGCTACACCCCGGTGGCTCCCGTGTATGCGGGGTTATTCCCGCCGAATCTCTCTCGGCTTCGAAGGTTCGGCTAGCCGGTGTCTTCTCCGCCTTGTTCCGGGATCGCCCCCGTGGTGTGGCCCCGTTCTGGAGAGCGGCGTCCGAAGCGGCGACGCTTTGATGCCTTGCTCCAGCCCCGGGACAGGGCCGGGTTGTAGGTCTTCCGGTCGGTGGGTCGACGGATCAGCGTGATGCCATCAAGGTCGACAGGCTGCCAGTGGTGGTCGTGGACCTGGAAGCACAGCCGTTGTTCACCTGGCTGCTGATGGACGAGCAGGGCACGACCCGGCCCGGCCATCTCGACAACTTTGGCCCAGAGGCGTTGCCGGATTCGGCTGTTTACGTGGCCCACGTACACGCCGGCGGAGATTTCTAGCAGCCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25744-28057 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPE01000021.1 Micromonospora trujilloniae strain NBRC 110790 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 25744 29 100.0 32 ............................. GTCCACACCTCCGCCGGCACCCTGGAGGACCT 25805 29 100.0 32 ............................. GGGGAGAGGCCGCGGGACTTTCCACTCCACGC 25866 29 100.0 32 ............................. TTCCGCTTACGCTGGAAGGCGGTCGTCGCGGC 25927 29 100.0 32 ............................. TCCATGTGGGTGTCGCCGTAGATGTTCAACGG 25988 29 96.6 32 ............................G CGGCCGGACCCGCGGCGCACCACCGTCCTGTG 26049 29 100.0 32 ............................. TCGATCACGTCGCCGCCGTCGAGACGGATCTC 26110 29 96.6 32 ..............T.............. ACCACCGGGTTACCCCGGACATATTCGATGTA 26171 29 100.0 32 ............................. CGCTTGACCATGCGCCGTGCCTCTTCGGGGCC 26232 29 100.0 32 ............................. CGGCCCGGCGGTTCGATCTTCCGGGCGGACTG 26293 29 100.0 32 ............................. TGGACTACTGCCTGCCCGACTACCCCGGTGAT 26354 29 100.0 32 ............................. TCGGCGTCCGCCAGCTCGACCGAGCCGGACAA 26415 29 100.0 32 ............................. ACGTCGCAGCTGGACGTGGAGTCCGACGAGCA 26476 28 93.1 32 .................-..........G ATCCTTTGCCCTGGTGTGTCTCGATCCAGCCC 26536 29 100.0 32 ............................. TCGGACGGGGTAGCTTCCAGCGGGTCGACGTT 26597 29 100.0 32 ............................. ACGGCGCCGAGATACTGCGTCTCCCCCAACGT 26658 29 100.0 32 ............................. CGGTCTGGGGGGTGAGGGTCCGCCCGGCGCGG 26719 29 100.0 32 ............................. GTGGCTCGCAGGACGTGCGGGCCCATCTTGGC 26780 29 100.0 32 ............................. ACCCGTCTCGCGCTGCCCGGATACCAGCGCAG 26841 28 96.6 32 .................-........... GTCGACGGGTCCGCCGCCCGCTGCGCATCCAC 26901 29 100.0 32 ............................. AGGGCGTCGCCGGTCAGGTGGGACACGTCGAC 26962 29 100.0 32 ............................. GTTCGGCGGGCGCAACGTTCGAACGTTCACCC 27023 29 100.0 32 ............................. GAGCAGCCTTTCGTGCGGGGCATGAAGCGGGT 27084 29 100.0 32 ............................. ACCGGCGCATCCGGCTCGGCCAGCCCATCCGG 27145 29 96.6 32 .............G............... ACCAACGCCACCGCGACAGCGAAGGCGATCCC 27206 29 100.0 32 ............................. GGCAGCAGCAGCGCGTCGTAGGCGTTGCCCAG 27267 29 96.6 32 ............................G TTCCACGAAGACGCCGACGGGTGGCGGGTGTC 27328 29 96.6 32 ..............G.............. AACCGCTATCTCGTCGCGGTTATCGTCGGCCT 27389 29 100.0 32 ............................. CGAAACGCCGCCTTTCGGACCTGGTCGAGCAG 27450 29 100.0 32 ............................. GTGTCGGCGTCGTCGGACTCCAGCATCGCGGT 27511 29 96.6 32 ............................A TCCTTGTAGCCGAGGGTCAGGCTGTAGCCCTC 27572 29 93.1 32 G...........................G TATGCGGCGACCCGGCCCGGTAGGTCCCGCAC 27633 29 100.0 32 ............................. TTGTCCAACGCAGTCACCGTGCCAGCCTTCTT 27694 29 93.1 32 ..............T.............A TAGCAGGGGTCGCCGTCGGTGACCCGGGCGAA 27755 29 100.0 32 ............................. GGCGCGTCCCACAGTGCTCCGGGTACCTGCTC 27816 29 96.6 35 ...................A......... GTCATCAGGTCGACCGCGGTGGCCTTGTGGCTCGG 27880 29 82.8 119 ...G................TC..C...G CCTGAAACTGACCCCGTGGTTCCGGAACCCGCCCTGAACAGAGGGGCTCAAAGTTCAGCCGGCGTTGACAGCGGGGGTGATCCCCTCACCGATGACGTCCACCAGGACCCCTTGAGGGC CG [27903] 28030 28 75.9 0 .GC......-..T..CA......A..... | ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 37 29 97.6 35 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TTCGACCCGTGGTTCATCGCCGGCACCATCTCCCGCACCGACAACCTCCGCATCGCCGGCCGCGCCGCCAGCACCGGCAACGGGGCCATGCGCATCGACGTCCGACGACTGTCCATCCCGGTCGTGGCACTCGAACAACAGCACGCGTACGGCCAAGCCTTCCGCCAACTCGTCGAGTTCCGCGCCACCCTGGAGCGAGCATCAGCAGCCGGAGCCACACTCGCCCGCGAGATCAGCGACGCCCTGACATCGGGCACCCTCGGCCTCACATCCTGATTCAACTGACCATGATGGAGCTGGGCGGTCGGCAGACCAATAGCGGCGACCAAAACTGGTCATCCCTGAGCAGCCGTCTGAACCGGCCGCGCCCGGTACGCTGCTCTCACCGCACCTCAGCACTGGGGCGTCGCCCTTGCAACACAGTCCGCAAAGAGGCGATCTTGCGAAGCAAAGTGAATGAAACCGGAGTAGTCGATCTATAGCGCCGCAGGTCAAGAAGT # Right flank : CGAGACGGTCAAGACACGTAGCCCGGCCGGCAGTTGCCTCCCTGCGCCTATCGGATCCCGCGTCGAGTGCTGAGTTGCCGGCCTGTCACGTTCGGCATTCGGTCGACTACCGTGGACGCCTGCACGACACGTTCGTCCGTCCATGGGGGAGGAAGATTGCGGCACGGTCGGCGTTCGTCACTGACGCTGCAATTGTCGGTGCTTCTGCTCGCGGTGCTGCTTGAGGTAACGACGAGCCTGGCCACGGATGCGGCTGCCGGTTCCGGGCTGTTCGCCTGGGTCGAGGTGATCGCCGGGCCGGCGCTGATCGTGCTCCTGCTCGTGCTGGTCGGCGGCAATGCGCTGATCTTGTGGTGGGAGAACCCTCGTACGCCGAAGCCGACCTGGGACGGTGACCGTTCGCCCTATCCGGGACTGTCGGCGTTCACCGAGCAGGATGCGGCGGTGTTCTTCGGCCGCGACGAGCTGGCTGCGGATCTGGTCCGCCGCATGCATCAGCT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32269-33702 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPE01000021.1 Micromonospora trujilloniae strain NBRC 110790 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32269 29 100.0 32 ............................. TTGAGTCGATCTAATGCGTAGCGGGCCGGGCA 32330 29 96.6 33 ............................G GTCGTCTCCAAGAAGTTCCGGCTCCCCAGCAAC 32392 29 96.6 32 ............................G CCGCAGCGTACGAAGCTTATCTCGCAGCGAAT 32453 29 100.0 32 ............................. TCCCGGGCAGCCATGTGGTCGAGCGACTTCTC 32514 29 100.0 32 ............................. TCGCTGTGCCGGTACGGGGCGAGCTGAAGCGC 32575 29 100.0 32 ............................. GGCAACGCGCGAAGCCTCGACCGGTGGGGCGA 32636 29 100.0 33 ............................. CAAGACGACATCACCCGCATCAAGGCCAGCTCG 32698 29 100.0 32 ............................. TCCGTCCAGGTCTGGATCTGACGCCCCGACTC 32759 29 100.0 32 ............................. AAGTCGGCTGGAATGTGAGCAGGGTCGGCAGA 32820 29 100.0 32 ............................. ATCAGGAGAAGGGTACGAATGTTTCCGGTGTC 32881 29 100.0 32 ............................. GTTCGTGTCCTCTGAGTACACCGTGGCGGATC 32942 29 96.6 32 ............................A TCCTCACCACGCTCGGCGACCCGGCGACCAGG 33003 29 100.0 32 ............................. GCGCGTGCGAACTGGCGGCGCTGACCGACGCC 33064 29 96.6 32 ............................A CTAGACGGGATATGGGGCGGGCAGACCGACGA 33125 29 100.0 32 ............................. CGTGTACTCGCCGAGCGCGTCTGACCCGGCGG 33186 29 100.0 32 ............................. TGGTGCGCCTCGCCGGCGCCGCCGGGCTCGCC 33247 29 100.0 32 ............................. CGTTCGCGCAGCGCCTCGACGCTGATCGGCTG 33308 29 100.0 32 ............................. GTGGCCTGGCTGACCGGAGCTAGTCCGGCAGT 33369 29 100.0 32 ............................. GCGCCGCCAGTCACGATCGCGCTACCGGTCAC 33430 29 96.6 32 ............................G TCGGGCACAGCATGAATGGCGAGGCTGCCATT 33491 29 100.0 32 ............................. GGCGGCAGCTCGATGAAAGACCAGATCACGAA 33552 29 100.0 32 ............................. GGGTCGACCGCCAGCATCGGCCAGCCCAGCGA 33613 29 100.0 32 ............................. GTTTCGGGGTAGCTGTGAATTTTTCCCATTGT 33674 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CTTCGCCGACGAGGAACTCCGCCGGATCCACACCGAGCTGCTCGCGCTGCGGCGACGCCCAGTAGGCAGCGTTCGCCTCCTCAAACGACTGGTCCCCGTCATAAGAGATAACCCAGATGTGGGCATCGCGCTCGCGGTCCACCCACGACCCGTGCACCTCAAAACCGAACTCACGCCGCAACGGCACGACCAAGGTCTGCCACGCCCGCACCCAGTCGTCCAACCGCCCTGCACGCACCCTGTAGGTGCGGATCTGCACAGTCTTCACGGCAACTCCATCGTGTCCGGCAGCACTTCCTGACGCTCGGCATCGCCCGCAACAGCCGATCTACTCGACTCGCTCAGCGGTGATCCTCACGATGACACCCGCTACTCTGAACCCCAACTCCCGCCGCACCACACACCCGACCCGTTACCAACGGCAGAGGAGCTAGGCGATCTTGCGAAGCAAAGTGAACGAAAACGGAGTACTTGATCTCTAGCGCCGCAGGTCAGGAAGT # Right flank : TCAACGCCGCTCCAACCCTGGCTCTGGCACATATTCTGTGATTGATCTTGTTGGTGGCTCACGGGGTGGTCAGGACGCGTTTGCGGAGGAGGTCGAGGTTCGCGCGGCCATACATTTGTCGCTTCATCGTCTTGATGCGGTTGACCTGGCCTTCGACGGGGCCTGAGCTCCAGGGCTGGGTGAGGCCGGCGACGACGGCGTCACGGTCGCTGGCCAGGCCGGCGGCGAAGCCGCGGATCTCGGGGTATCCGGCGTGGCGGGCGCGGTTGATCCAGGCGTCGAGGTGTTGCCCGGTGCCTTGGTGACGGACCAGCGCGGCGAACCCGCGGGCGAGGCCGGCGACGGTGTCGAGGTCGGGGCAGCGGCGGCGGGCGTCGGTGAGATCAGCGCGGTCGTCGTCGGTGAGTTTGTGGCCGGGTCGCATGATCCAGGCGGTGATCCGCCGGGCCGACGGCACCCGTACTGCGGTCGCAGGGGTGGGGCGGGTGCGGTTGATGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 35447-36510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOPE01000021.1 Micromonospora trujilloniae strain NBRC 110790 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35447 29 100.0 32 ............................. GTGTGCGCCAGTTGGTGGAGGAGTCCGGCCAG 35508 29 100.0 32 ............................. AGGTCGTAGGCGTGCCTGGCGCGCACCCGCAG 35569 29 100.0 32 ............................. CTGATCGCCGTCCGCGAGGGCCCGCTGAGCCT 35630 29 96.6 32 ............................A TACGCCCAATCACCGGGGGCAAGGGTGCTCTC 35691 29 100.0 32 ............................. CGTCCTCGAACAGCACGCCGTTGTCGGCAGTC 35752 29 96.6 32 ............................T CCCCGACGCGCGTCGTGAAACTCGGAAACAAC 35813 29 100.0 32 ............................. TGGTCGGCGTCTCCGGCGGGCGCGGTGTCCCG 35874 29 100.0 32 ............................. GTCTGTAGCGGCATTCCTGGCAGCGTGTCTGA 35935 29 100.0 32 ............................. CCGGCCAGAAACCGCCTCTGGCCTGGTGAAAC 35996 29 100.0 32 ............................. GAAGACGCCCCACCTGGCTGAGCCGGGTGGGG 36057 29 96.6 32 .C........................... GGGGAATAGTTACGGCCGTACGTAGTGCTTCC 36118 29 100.0 32 ............................. AGCAAGCGAACGTTCGGGACTTGTTCGTAACC 36179 29 100.0 32 ............................. GTCACTCGACAACGCTGAGCAGATGTGCCGTT 36240 29 100.0 33 ............................. TTCGGCGGCGATCTCACGACGAAGAAGGTTCGC 36302 29 96.6 32 ............................G CAGTCCGCGCCACCCTCGAAAGCAAGGCCGCC 36363 28 93.1 32 G................-........... GAGCCGGACATGGGTCCGGTGGCGCGGATCGC 36423 28 93.1 32 .................-..........T CGACCATCCGCCGCCAGATCGACGACCTCGCC 36483 28 93.1 0 .....-.....A................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GCTGCGCCAACCGGCTGCCCGGTCGACCGCCCAACGCCGCCGCGACTGCTTGCAGATCACCTGTCGCGAGGACCGTGTGGCGGGCATGCCTTCGGGTCAACCCCGGCACCTGCTCGACGAACGTCTGCCGTCCGCATTCGGCGTTCACGCAGGCGAATCGACGGACCGTCAACGCGACCAGCACCTCGTGGCCACCCAACCTGACATCACCCAGCCGCCGCACATAGCGACCGTGCACCGTGGTCGACCAGGCGCCGCAGACCCCGCACGACGCCCGCACCGTCTGCGTCGCCGCGTCGATCCTGACCGTGATGCCCCGAACCACCACCGCTTCCAACCGCAGGCCCGTCAGGTGCGGCAACAACGCCGGAATGATCTCCACCTCGGCACCCAACCCGAACTACCGGCGAGCGCGACTCACAAAATGTGTGCCAGAGCCAGTTTTCAGGCGGAGCCGACAGTGATCCCCTCCGTGTGCGTGGGGTTAGTGAGCCGATTGG # Right flank : CAAGTCGGGGAAACATGGTGTGCGTGTAATGCCCTGCCTGCCCGGACAAGGCATTCCACACGTTATGGCGGGGTCGGAGCCTCTGCTATACGGGCTGCGGCATACGGCGGGCGGCCTCCGCGATGAGGGAGGCCAGTTCCTTTGGGGCGGTGAGTTCGGCGACGTCTGCTACGTCGAACCAGGCGGCGTTGGCGACTTCTTCGACTTGGGCGTTGAGGGTGTCGTTGTGGGTGCGGCAGATGTAGACGAAGTCGATGTGCCGGTGGGGGCCGACCTTGCGGTCTTCGATGTCCATTTCGATGATCGCGAAGGGTGGGGGGATGCTGCGTACGGCGGGGTGGGTGAAGGGCTCGGGTGCGAGGATTTCTGCTTCGACGCCGGTTTCTTCTTCGACTTCGCGGAGGGCGGCTTCGGCGGGGTCTTCGTTGGGGTCGATGTGTCCGCCCGGGTACAGCCATAGTCCGATCTTGTTGTGGTGCACGAGGAGGACTTGTCCCGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //