Array 1 54-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVEU01000460.1 Bacillus pseudomycoides strain AFS088632 AFS088632_110_B10_Contig368_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 54 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 120 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA TG [143] 187 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 99.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGGTGCGTGGATTGAAATGTGACGGATATAGAGACAGGTGAAAAAACAAAAAG # Right flank : | # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.90,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29695-29017 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVEU01000079.1 Bacillus pseudomycoides strain AFS088632 AFS088632_110_B10_Contig79_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 29694 29 100.0 36 ............................. TCTTTACCAATTTCAATACCATATAAAGTTTGTTCT 29629 29 100.0 36 ............................. ACAGCAGCGAGCATTAGAGCGTCAAATAAAAAAAGC 29564 29 100.0 37 ............................. ATCAGTAATTGCAATCTTGTTCTTAAAAGGTTACAAG 29498 29 100.0 36 ............................. GAATATTGAACAAACAGGATAGAATACGATTTAATA 29433 29 100.0 36 ............................. TACTCGCTTTTTGAGTATGGACCAACAAATTACTCG 29368 29 100.0 36 ............................. TTCATCAAGGAAATCAAAGTAGGTCGGGTTTTAGCT 29303 29 100.0 36 ............................. GTCGCATTTTCGAATCAAGTTGAGATAAATGGAATT 29238 29 100.0 35 ............................. TTGACCTCAAGAGCGACTGAAATGTTAGGCTGAAG 29174 29 100.0 36 ............................. ACTGTATAGATATACTCTGTTGTTCCATCTCCGATG 29109 29 100.0 35 ............................. GTCAAAGGGCTGTCCGAAGTGGTACAAGCCGTATA 29045 29 93.1 0 .......................A.G... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.4 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTATTGGAGAAGATGCTTACAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACTCAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCAGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTCCTTTTGAACTTTATTTCGCTAAATGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGACAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGATGAAAATATCAGG # Right flank : GGCTGAGGCGAAAATACTTTGTGTGAAGATTTTTCTATAAGGGGTCACCTTACATGCCCATCAACTTAAGAAGGAAAATAAAATGAACTTTCGTTCATATGAACGAAAAAAACTTAAAATATTTTGTGTCCTTAAAAATGAGCATACCAAATAAACCTAGATAGGTATCATTTTTAAAAATTATGCTGCTTTCTTTTGTTTTCCAAGTCCACTATACTCATAGACAACACCCATAATATCAAAGACTGTCTTTTTCTCATATCTATGAGATTTCCGTCCATTCTTCTCTAGGAGGTGGAATAGACGGATTAGAATCTTTGTCATTTCTATGGTGCTTTGTCGTATAGTTTGATATTTGTATGGCTATTTAATAGTCAGTTTTATTAATTATAAAAAGATATCAACTTAGTTTTACTTTATATAATTTAAACGTCCCAAAAAGCAAAGTTTCTGGGACATTTTTATTTATCAATATTATAGGTTCCAGATGTTCCTAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //