Array 1 3618-106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFP01000076.1 Xanthomonas oryzae pv. oryzae strain IXO89 contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3617 31 100.0 35 ............................... GCACGAGACACGTGCGACAATTAAATTACTTGGTG 3551 31 100.0 35 ............................... CATTGTTAGATCAGATCCAAATCGGGTTCATCGCC 3485 31 100.0 34 ............................... TGGCCAGGTGACGAATGCAACGGGAAAAATATCT 3420 31 100.0 34 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 3355 31 100.0 34 ............................... CGGAGCAGCACTATGCTCAAGCTGCTTAACCAAG 3290 31 100.0 36 ............................... ATGACTGTGCTGATTTTGTCATGCAGGTTCAGCAGG 3223 31 100.0 36 ............................... AGCGTGATTCGGTGCGGGATAGTTTCCCCGTTGATT 3156 31 100.0 36 ............................... ACCAAGTGGGGTGCCAAGAAGGTTGCAAGCTTCTTC 3089 31 100.0 35 ............................... TGGAGCGGCAGTCCTAGCGCTTCAGCGGCGCGCCC 3023 31 100.0 36 ............................... TCGTTATGGCTTATTGACTATAGCGCGCACGACCTC 2956 31 100.0 35 ............................... TCGGTTTCGCCCCGCGCCCGCGCTGTTCGTCATCG 2890 31 100.0 34 ............................... GCGATTACGGCAGCACGAAAGACCAGCGCATAAA 2825 31 100.0 36 ............................... GCAAATGTTACCGTAGGTGCTGCACGCATCTCATGC 2758 31 100.0 34 ............................... ATCCCAAGCCGTGATCAGATCCACGACCCGCCCT 2693 31 100.0 34 ............................... TGGTAGGCAGCGTATGAGCCGCCGCCCGCCACTG 2628 31 100.0 33 ............................... AAGGCCGACGGAGCCAGGGCCATGACCATGCGC 2564 31 100.0 35 ............................... CCATTGCGCAGCTGTGTCAGTAGCGCGTCTAATGT 2498 31 100.0 34 ............................... AGGTTTTGCGCGCTGTCAAAGCGTCTGCACGCGT 2433 31 100.0 34 ............................... CAAACTAACATCGCAGTAAATCCAGCTATTGGCG 2368 31 100.0 35 ............................... TTCCATGCCGACCGACGCTACTGGTTACGTGACCG 2302 31 100.0 36 ............................... AACCTCTACCGCGACAATCGCAATATCGGCGCTCTG 2235 31 100.0 33 ............................... GTCGTAAACGTGGTGAACGATCTGCTCTACCGG 2171 31 100.0 35 ............................... GGATTAACTGCACGGCGTCGGACAGTTCGCCCAAG 2105 31 100.0 34 ............................... CACATCAGCGCATCGAAGCCGGCATTGTGCGCAA 2040 31 100.0 34 ............................... TGGTACTGCGACGGCGGTAGCATCCAGCGCGTCG 1975 31 100.0 36 ............................... CGAAGTCGCGTCGAACGGATCGGAGCACCGCTTGCC 1908 31 100.0 34 ............................... AACCCATTGGCCGAGATTCGACCAGGTGATAACG 1843 31 100.0 34 ............................... CCTCCCATGTCCTTGAGTCATCGTTGTATCGGGT 1778 31 100.0 36 ............................... CTGCGCGGCCGAGTGCTCGCCCGCGTCGCCAATTTC 1711 31 100.0 36 ............................... ACTGCAAGAAGCCGAGGAGCCACGACATGCACGACG 1644 31 100.0 37 ............................... TGGCCGAGGAGCGCCCAGAAATTCTCCACTGGCGGAG 1576 31 100.0 35 ............................... ATGAAGGGCCAGAGCATCGGCGGCATGCTCGGTAA 1510 31 100.0 35 ............................... CCAATTCGGCTGCAGCGCGAATGCGATGACTACCT 1444 31 100.0 35 ............................... ATCGGCCAGGAGGAATAACAACCGCAGCCTTAGCA 1378 31 100.0 34 ............................... TATATCATCTGCCAGGACTTGAACCAGCTCAAAA 1313 31 100.0 34 ............................... ACTGTTTGAGAGTCGCCGGCGCGAATACGGCCGC 1248 31 100.0 34 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACG 1183 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 1117 31 100.0 33 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTG 1053 31 100.0 35 ............................... GCCATTGCCGCGTACGCCGCGTTGCGCATCGCTGT 987 31 100.0 35 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGTG 921 31 100.0 36 ............................... CCGTCAGTGGAAGTCGGCGGAGGCCGACGGATGGAG 854 31 100.0 35 ............................... CATAGCTCGGTTGGACCGAACAACGATCACTGTGA 788 31 100.0 34 ............................... GCCAGCTCAATCGCCGCCCAGTCAATCGGGTTGA 723 31 100.0 34 ............................... TTGCTGAGCAATCTCACGCAGCCTCTTGGCCTTA 658 31 100.0 34 ............................... TTTACTGCGTATTCCGGCGAATTTGATCAGCTAC 593 31 100.0 33 ............................... GCCTGCCGACCACTTTCAACAAGGGATTGCACA 529 31 100.0 34 ............................... TTGTCGCAGCAGCCATAGTCATCGCCACAGATTC 464 31 100.0 35 ............................... AGGCAAGCAACCCACTGCCGGACATTGGAAGCAAG 398 31 100.0 33 ............................... GTTCACCGACGTTGATAGCCAGCCAGGTGGAGC 334 31 100.0 34 ............................... ACCTTGTCGAGCTCAACCGCTTTATGCACGAGGT 269 31 100.0 34 ............................... CAACAACACGCAGATCGAGGCTTAGCACGGGTTT 204 31 100.0 37 ............................... TGCAAGAGTTGATCAAGTCTGCAACTGATTGGCACAC 136 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 54 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CTGCATTATGGTCAGTGGCCCACCAAGCAGCTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23-1234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFP01000106.1 Xanthomonas oryzae pv. oryzae strain IXO89 contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 23 31 100.0 35 ............................... TGCTGCATGCTTAGCAGTTGTAATTCCCTCTGCCT 89 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 156 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 222 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 288 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 353 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 418 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 483 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 549 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 615 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 680 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 745 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 811 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 875 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 942 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 1007 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 1074 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 1139 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 1204 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 19 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TTGTTCAGACCTTCCCTAGACCG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //