Array 1 2783-1535 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLN01000157.1 Salmonella enterica subsp. enterica serovar Montevideo strain 238 NODE_157_length_8000_cov_1.34485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2782 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 2721 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 2660 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 2599 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 2538 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 2477 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 2416 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 2355 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 2294 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 2233 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 2172 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 2111 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 2050 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 1989 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 1928 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 1867 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 1806 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 1745 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 1684 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1623 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1562 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15154-13111 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLN01000048.1 Salmonella enterica subsp. enterica serovar Montevideo strain 238 NODE_48_length_25612_cov_1.34287, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15153 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 15092 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 15031 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 14970 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 14909 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 14848 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 14787 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 14726 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 14665 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 14604 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 14543 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 14482 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 14421 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 14360 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 14299 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 14238 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 14177 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 14116 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 14055 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 13994 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 13933 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 13872 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 13811 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 13750 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 13689 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 13628 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 13567 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 13506 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 13445 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 13384 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 13323 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 13262 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 13201 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 13140 29 96.6 0 ............T................ | A [13113] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //