Array 1 32254-29033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000002.1 Arthrospira platensis FACHB-835 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 32253 37 100.0 45 ..................................... GGACGGAAGTGGGGTACTAAGATTTCTCCAGGGTTCAATTTTGCG 32171 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 32096 37 100.0 43 ..................................... ACCGAGCGAGGTTCTCTCACTCTCAGGGAGCCTATAGTTGCAG 32016 37 100.0 45 ..................................... AATGCAACTGATGCTTTTCCTCTTTCGATTGCCCCCCAGTTTAGT 31934 37 100.0 42 ..................................... AGAAACCATATTTTGAAGAAATACTTTGAACTTTTAATTGTA 31855 37 100.0 46 ..................................... ACTCCCCATTTCTAAGGGAGTCAATTGTCCTTTAGGATCTCTAAAG 31772 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 31697 37 100.0 45 ..................................... TTCGGAGGGGCCGGTACCCCTTTATGACCGTGACCTCGCGCCTTA 31615 37 100.0 42 ..................................... TAGACTCGGATTTGATACCCGGTTTTCCCAGTGAAGGGGTTT 31536 37 100.0 45 ..................................... TACTTCCTGATAAAGGCATAGTTGGACAACACGATGGCCGTGTTG 31454 37 100.0 46 ..................................... TTCCAGCCAGTCTTCTATTTGCTTATGTCCTCGGACGAGGAAGTCT 31371 37 100.0 41 ..................................... TGTTTATCGAGTATTTGATTGAACTCCTTGCTTTTGACAAA 31293 37 100.0 42 ..................................... ATCGCTTTGCTCATTCAGCATCGCGCGTTGTGCCATATCAAC 31214 37 100.0 36 ..................................... GAGCCAGTTATCATCAGTGTAATCAAGCAAAGCCAT 31141 37 100.0 54 ..................................... CTGGGGGGCAAGGATGGTGCAGCTCGTGCTGTGGCAAAAGAGATCGCAATCACG 31050 37 100.0 42 ..................................... CTTGCAAGCCGAAATGTCGGCTATGGCTTTGCAAACGTCTTC 30971 37 100.0 44 ..................................... ACGGTAATGAGCGCCTGGAGTGCTGCAGCTTTCTCGGGAGCCAC 30890 37 100.0 45 ..................................... TTGGACTTTAGGCCCTTGTCCCAACTTTTTGAGACTTGACTTTTG 30808 37 100.0 41 ..................................... TGTTTCTTGCGCTTTGTTACTATGGCTGATAGCCACAGCTT 30730 37 100.0 43 ..................................... CACCTTTAATTTGAAATGCGTATAACATCATGTGTTGCTCCTT 30650 37 100.0 50 ..................................... CCGTCAAAATAGCCCGTTATGTCTATGCTCACCCCGCTCTCGATTGCAGA 30563 37 100.0 39 ..................................... TCTTCTCCGCGACGGTGAGAGGTGGGGAACTGCCACCCA 30487 37 100.0 39 ..................................... AAACTGAAGGCTAATGTTTTCTTCGACCTTAGAATACTT 30411 37 100.0 45 ..................................... CTTCTATAGACATGGATCTTCACTCACTTGGAATTCACTTCTCTA 30329 37 100.0 43 ..................................... GAATCCGCGAGCTCGAGCAACGCGTTTCCCACCTTGGGATTGG 30249 37 100.0 43 ..................................... CTGTCGGTGATTATCTCAAGGAGATCTAACTCCTCTCCCCCTC 30169 37 100.0 38 ..................................... TTTTTACTATTGCAGGGGGAGTTGATGTATCCTCCACC 30094 37 100.0 42 ..................................... AGGGATGAAGTCTTCCTCGACGATATCAATACACGCTTCTAA 30015 37 100.0 44 ..................................... GCTACCCTTGTAAGGGCGATACCCGTCGGACCCTGGAATCCCCT 29934 37 100.0 44 ..................................... GTAGCTGTAGTCATTGTTGTGATAATCTTTGCTACCGCATCGCT 29853 37 100.0 39 ..................................... GTGGAGTTAACTCGTCTCTGTCACTTCTTTTGGTGAAGT 29777 37 100.0 39 ..................................... GACCGAGGTCCTCGAGACCTGTGCCCCCTTAATAACGAT 29701 37 100.0 45 ..................................... ACTGGCAAGCCACCGGCATAGCCAGCCAAGGAGCATTTATCGCTC 29619 37 100.0 44 ..................................... ACTTAGGTTGATGTAGCCATAAATAAACCCCCTAAATTTAGGGG 29538 37 100.0 42 ..................................... ACGCGCGTGTCGATACTCTTAGGGTTGTCAGGGTGATACGAT 29459 37 100.0 47 ..................................... CTGTCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATA 29375 37 100.0 38 ..................................... CAGGGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAG 29300 37 81.1 42 ...TA.........G..T..T.TC............. AACCCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACC 29221 37 83.8 38 T..TA............AAG................. CAGGGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAG 29146 37 86.5 40 ...TA............AAG................. AGCTTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATA 29069 37 89.2 0 .................AAG..........T...... | ========== ====== ====== ====== ===================================== ====================================================== ================== 41 37 98.6 43 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TCGCGGATGTGGTGGCCAATCTTGGCGACAGGTTCCCCGATAGCCAACTACACCTCACGCCTCCCCTAGACCACAGCACACACCTGGGGGATTTGATTTGTACTTGGGCGAAATCTTACCTCTAAGATATCTTCTCCCTGCTCGGGTGGGGGGTGATTCTCATAATTATTGGGGTTTTTTGAGGCGATCGACCCTCCCCAATATCTCTGTTGGTTTCGGGGTAAGTGTTTGGGCTTGTGTAAAGTAATGTTACAGATTCTCATAACCTCGCGCGAGTTTTAATTTGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACACTCTGGCGCTCTCTCTGATACTATTAATTTCAGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTATGCTCGCACAAACGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGCATAGG # Right flank : TTAACTCCACAAGGACACCTCGTCGCTTGTGGTGAAAGCGACCGTCAGACCCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGAAACCCCAGAAATTAGTTAATTTTGAGAGCGATCGCCAGGGTATAATCACCTGCAAGGGATTTTTGCTAATTGACTCAATGAAACCAGGTCCATCGACACCAGAAACACATTTGCCAACCTTTCCCGTTTTAGGATTACCAGTCCATTTGGCTGATAATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 103263-105911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000002.1 Arthrospira platensis FACHB-835 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 103263 37 100.0 39 ..................................... GTCCGGTGGGCTTCATAGTAGCTGTAATTTGGACGGAAG 103339 37 100.0 44 ..................................... TTCGCGCGATTAAAGCACGTAATCAAGACATTTGATTTGCCACA 103420 37 100.0 44 ..................................... TGTTGGGCTCGTGGCAGCGCAATGCTGCGCTCACACCGCCAGAT 103501 37 100.0 44 ..................................... CGCCCATCCCACGAGGCAATCCTTACCTTGATATCTTTTCTGAA 103582 37 100.0 41 ..................................... TTAGAATCAAATAAGGAAAATAAAGAAATATTAGTTTTAAT 103660 37 100.0 46 ..................................... CCAGGCTTTGAGGATAGGGTAGATATCCCGCAGACTCATCACCCCG 103743 37 100.0 44 ..................................... TTTGAAACCTTCCTTTTCTAGCAACTCGACAGAAGCGATAACTA 103824 37 100.0 40 ..................................... ACTCTTTTATTCTATGTAGTTCCGTGTAGTTGTAGTATAA 103901 37 100.0 47 ..................................... CTCCTGCGTTAACGCATTTTTCGACTACGGAATCGAAATCCTGCAAC 103985 37 100.0 48 ..................................... CTTAATCTTGTTTATTGCTTAGTTTCCGAGATAATAATCAGCGTCCTC 104070 37 100.0 38 ..................................... CTATGAACGGGACCTCCACCTCCACGGATAAGGAGTTT 104145 37 100.0 45 ..................................... GTAACTTGTTTTCCTTCTACGGTTGTCACTAGAGAAGCAGATCTG 104227 37 100.0 41 ..................................... GTTCGTCTTGCAGGATAGCATCTGCTCGTTGATTCAGTTCA 104305 37 100.0 43 ..................................... AGTCGTAGGTACTGGAACCGCATTCACCGCTGACTTTGCTATT 104385 37 100.0 48 ..................................... TTGTGAATTTTCTACTGTTTCTCCGTTGGCACTTATGTCCACATAAGT 104470 37 100.0 40 ..................................... CGGCCCGTAGGTATACTACCAGTTCGAAGGTAGTCCTGAA 104547 37 100.0 43 ..................................... ATGGGCATTGTCGTTTTACTACAATCCTCCCTTTTTACTTTTT 104627 37 100.0 41 ..................................... CAGACATGATTTGTATGGATAAATACTCCCCCTTCTGGGTG 104705 37 100.0 43 ..................................... TTAGCTGTCTTTGGTGTTCATTCATCTGGAAATCCTCAGCAGA 104785 37 100.0 41 ..................................... TAATTCAGGGTGTTACACCAAATAGGTGTATCCGCTTCCCA 104863 37 100.0 41 ..................................... TTATAATATTTTTAAAGAACAAGAACCAAAACAAGAACAAG 104941 37 100.0 39 ..................................... TTCGAACAATAGCAGTTCTGAGATTATCAAAATAATCTT 105017 37 100.0 44 ..................................... TTAAATGACCTCATAGAAGGTATTTGTAAATTATTTCCTTTTAT 105098 37 100.0 36 ..................................... TTCTGACCGGGGAGAAGCCCTCCCCTTACCGAGTTT 105171 37 100.0 42 ..................................... TATGCTTTTGATTCCGCTTCTTTTATCTCTTGTCTAGTGGCG 105250 37 100.0 41 ..................................... AGTCCATATTTTAAAGTACCCGGTTACCTTTTTATTATTTA 105328 37 100.0 45 ..................................... ATAATCCACCTTCCGATTTGACCGTTATTCTTTACAGCCAACGGA 105410 37 100.0 42 ..................................... GAACCTGGGGCATATTACCCTCTTGTCCTGCAGAGAAAAGCC 105489 37 100.0 39 ..................................... TTTAACCAGACTACATCACAGTCTGTTAGCGCTTCCTCG 105565 37 89.2 43 .................AAG...C............. GATCGCAATTCTCTAGTGCCCTTTTCCTGTGATACCCGCTGAG 105645 37 89.2 39 .................AAG...C............. TTATCGAATGTCGTCTTAGAGTGCTTTTTTGGATTTGAA 105721 37 89.2 41 .................AAG...C............. AGGGGGAAGACTCCCCACTGGTAAGCGCCATATTCTCCCAG 105799 37 89.2 39 .................AAG...C............. GAAATCCGAGCGATTCCACTGGGTTGGTTGTGTTACTGT 105875 37 86.5 0 .................AAG...C............G | ========== ====== ====== ====== ===================================== ================================================ ================== 34 37 98.3 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CAGGTGCATTGGACTCAGTTCACCGCTGACGGACAATCTGGGGATGCCAAAATGTTGACAATTGCTGAAATTTCTTGGGGTGGACTTTGGTTATCTTCCAGGGTTAGGTGGGCTTGAAGGTCTCTCCCCTGCCCCAGGGAATGAGTCGGTGGGTTGATTCTCATAATTATTGGGGCTTTTTAAGGCGATCGACCCTCCCTAATGGATGGATTCCTTTCTGGGTGAGTGTTTGGGACTTTGTAAAGTTATATGACAGATTCTCATAACCTCGCGCGACTGGCAATCCTGGGCTAGTTCAGGTAAATTTGAGCTAGAAAAAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCACTATGGCTGATAATATATATCCAGCGAAAACAAAGGAATTTGCTCCCCAAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGTACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCTAACTGGTGTGTTGATTTTCTCAGGGTCGAAGTTGATAGAGGTCCGCCAGTGGTCAATGGGGTAGTTAATAGCCATCACCTTTTGCGACCCTAGAGTTAGGGATTCATCCCCAAATTGGGTGGGGTATGATGGTGCAAAATCCGATTAATAATCCCACTGGTAGAAGTAGGCATTTCCACGGCAATTAGGACAATCTTGCCGCCATAGCTTTGAACCGTGGGCGCTTCCGGTAGCGTGTCAATGGTGTAATCACCACCCTTAACATAGATATCAGGTTGTAACTGTTCAATAATCGCCCTAGCAGTGCTTTCTGGAAAAATCACCACTGCATCTACGGGTTTTAAGTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCAGCCGAGTGGGGTTTAATCAGGCGAACAGATCGATCGCTATTGAGACCGACCACCAGCGATCGCCCTAAACTTTTGGCTTGGGTCAGGTAGCGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 6249-4274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000051.1 Arthrospira platensis FACHB-835 contig51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 6248 37 100.0 42 ..................................... TCAGCCATCACCGGAAAGCCCTCGTCATCTGGCATCGCTTTA 6169 37 100.0 36 ..................................... CCCGGAGGGGGAGCCCATACTGAACTACCAATTTAG 6096 37 100.0 37 ..................................... CTTTGACCCGGAGAAGTCTTACCATATCGTCTTCAGG 6022 37 100.0 38 ..................................... ACGAAGAGGGAGAACGGATGGGACTCCGACATCCGTGG 5947 37 100.0 44 ..................................... TCGACATCGGTATCTAAATGCCCATCAAACACTCTGCCTATCAA 5866 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 5788 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 5705 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 5627 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 5555 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 5478 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 5399 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 5322 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 5244 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 5161 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 5083 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 5011 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 4934 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 4855 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 4778 37 100.0 44 ..................................... TACTGTTAATTCTAATTTTTCTTTTAAAAAGCTTACTATACTGT 4697 37 100.0 36 ..................................... TTTTATATAGATTAAAGGAGGTTTATGCCATTTTCA 4624 37 100.0 41 ..................................... TTTGAAGCCCATTTTATTTTCCTCAAATTACAACAATAAAA 4546 37 100.0 42 ..................................... ATTTTCTAAATCCTGAACCCAGTATGTTCCGCCTCCTACGGG 4467 37 100.0 45 ..................................... ATAATATTATTTGATGACCAGGGTACGTCTCAGGTCGTTAGGGGA 4385 37 89.2 38 .................AAG.A............... GGCTAGGGAATGCCGATCGCATTTTGTGATTTTCCAAA 4310 37 83.8 0 ...AT................AA.......G.....G | ========== ====== ====== ====== ===================================== ============================================== ================== 26 37 99.0 41 GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTGAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCGACTAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCTTACGAACCACCAGACTTTCTCATTTTGTAAGGGTGGCGATCGTCCCAATTTTGATGGCTTTGGGGCTGAAATGCCCTTGAGTCAATGATTTTCAGCAATGTAAAGTTATATTGCAGTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAAGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGTTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCGAGAAAACCGAGTCTTAAAAAGCCCCCAGGGTGAAGTCTTGTTAATGAGGGGGTAGGGTAGGGAAACAGTGTCAGTAGAAGATATTTCCCATCAATTAACCTTCCACTTCTCCATGGGTTTGGTGGGGGGAATTTCCTAACTTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAGCCAAAATGCTGAATTTCCAAAAAGTTCGCATAAGCCGGGGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCTAGAGTTGCCGCGCTTTCCAGGGGACCCACAAAACTGCTATCTCGGTCTAAAAAATAAGGTTGTTTGACCCAATGTTCCATCTGGTTATTGTTGAGAAAATAACAGCCAGCGTGGGGGTTTAAACTGCGATTAAATTGAATGGGTTGCTCCATCACCTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCCGTCACATGGGGTAATAAATCCCCATCAACATAGGCTTTATTAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 23651-22142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000075.1 Arthrospira platensis FACHB-835 contig75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 23650 35 100.0 34 ................................... CATCATCTCGATGGCATGGGAGTGTTCTCAACTT 23581 35 100.0 36 ................................... CTGCCCAAGGCCTGCCGCCCCTTAAGTCCCTAAAAC 23510 35 100.0 37 ................................... GTTACATCGTTACAGATGTCTACTTTGGCGGTCGCGA 23438 35 100.0 32 ................................... CAGTATAAGGTTGCATATGCACATGTCAACCA 23371 35 100.0 41 ................................... AGGAAGGGTGGATCGTGGTATTGACATGTAAACGAGGTCAA 23295 35 100.0 36 ................................... TGTTTCATGGTCTACAAGGTCTACAAGGGGGGGCGA 23224 35 100.0 37 ................................... ATTGGTGTCCTGAGATATCATTGTGGTATCAAGACAA 23152 35 100.0 35 ................................... TGCTTCGTCCCCTTCGTCCTTGGGACTGGGAACTT 23082 35 100.0 40 ................................... CTTTGATGTCTTTATTCCCAACGGCTACGGCGGCTTCAAG 23007 35 100.0 35 ................................... GAAGGAAGAGGCTTTGTCGTGGAAGGAAGCGACAA 22937 35 100.0 34 ................................... CAGTGAACGATGTAAGCATCATACGGTCCATATC 22868 35 100.0 32 ................................... CGAAAGACAAAGTTTTTGTCCCCCACCTTCCA 22801 35 100.0 35 ................................... TACAAGGTCCTCCTCCACGGGGAACGACAAGTATT 22731 35 100.0 34 ................................... CGGAGGAATGTTTGTTGTTCGGGCAGCAACCTTT 22662 35 100.0 33 ................................... GAATAGGTCTAGACGCATTCAAGTACCCATCTG 22594 35 100.0 34 ................................... CAGTTCGCTCCTTAAAGTGCGAACTATTTGGGTT 22525 35 100.0 32 ................................... CAGGGGGGAAGCCAAGGTCTATCTCGGAAAAA 22458 35 100.0 36 ................................... AAACTAATCTCCGCTTGTATCCGTGAAGGGGAAGTT 22387 35 100.0 34 ................................... TAGACGACGCATTAAAGTACTACCCATCTGGCTA 22318 35 100.0 37 ................................... GCTAATAACCTTCTTTTTTTTGCTATTCCATTGTCAA 22246 35 100.0 35 ................................... CTGAGAATTTGGGTCACGGTGCAGATACTGTACTG 22176 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : ATGTTTTTGATGGTAGCTTTCAGATTCGTTTAACTCTCCCAGGGCATCGTAAATATTCCCCAAGCCGTTGTAACAAACCGCATCACAGCCCGGATTCAATTTTCCGAGGAGAGATTTATAGAGTTTTTCTTGTTGGTCATAATAACCCCAAACTCCCAATTGGTCGTGTAATTCTTGGTTGCTTTGGGGGTCAGGAATCACTGTCAAAATTTGGGTCGCCCGCCGCCAATCTTCCACCTCCCATAGGTGATAAAAAGACTCCAGGTAATGCTGCACCCGTTGCAGGGGGGTGGCTTCTTGGGGGGGGATGCTTTGATGACACAAAAAATATTCGACGGCAGTATAAGTAGCTAACTGCTCGATGGGAACTGTATTGATATCGATATCAAGTTCATCCCACAGCATTGGATGTCTCCTTTTGGGTATCCCATTGGCTCTGAAACAGTTTAGCACTACTTCCGTTCAAAAAGCGATCGCTTTTTGACATTTACAAAAAAGTA # Right flank : AGCATAAGAACGAAATCCTTGCTCTGAAGGGATTCTAACCCACCAATTCTATAGGGGTCAAGTCAGTACCCCAATTATTGACATAGATTAGCAATAATTGAGTTAACAAAATGACTGAAACCCGGTCGTAGCAGTCCACCTATAGGGGTCAACGAAAAAATCAGTGATTGGGCGGTTTGCCAGACCCCTGTAGGTGAATGGATGTTACAGGTCAGACCTGGGGCATCATTTGGAAAAAGCTAAATTTTCCACAACATCGGTCGATAGGTCTCCCGTTCTCCCATCAGACAGGAGATGTACTCCCACACCTGTAATTCCAGACAGCGATAGTAGCTGACCTTGTGACCTGTATGGGGATGGGTGGTGGAGAGGGATAGCTTGTCCTGCCAGTGCTTGAGATACTTTTTCAGAGCATCCGAATGTAGGTAAACTGATTCATTTAAGCTGAACAGTCCTGAACATTAATTGACAATGCTCGGACTGTAACTATAGCAATACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 11351-12340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000083.1 Arthrospira platensis FACHB-835 contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 11351 35 100.0 38 ................................... ATCAATGATGGTTACTCCTGGGTTTCCGCCAGGCAAGA 11424 35 100.0 38 ................................... TGTCCATTCCTTGGGCACTGGTTTCTGCCCTTGCTCTG 11497 35 100.0 41 ................................... GCCAGTAGTTTGGATCGCTATGGCAGTAGTTACCAGTACTA 11573 35 100.0 39 ................................... TACGGTATTTTCTAGCATCTGTTTAGATACTGTAAAGTT 11647 35 100.0 37 ................................... CAACCTTTATCGCTGGTCCAGGCGGAAGGTGGAGAAT 11719 35 100.0 41 ................................... CGGACTATAGTTAGCCGATGCCATCTCCACAGGAGAGAAAA 11795 35 100.0 38 ................................... CTATTTATTTCGTAAATTTTAGCGGGGCAGACCCCGCT 11868 35 100.0 34 ................................... CATGGGCTATAATTAGCCTTAGCCCATACGGTTA 11937 35 100.0 42 ................................... TAAAAGCATCTTTCGCAGAGAGATAACTATTGTAGCTTCCCA 12014 35 100.0 35 ................................... GGGTCATTTCCAAGCGATGCGACGATGATGTCATC 12084 35 100.0 43 ................................... GATCAATGTTGTTAAAACAAAGTTCCGCAAGTTGGCTATCAGT 12162 35 100.0 39 ................................... CTCGTAAACTTTTGCGGGGCATGACCCACTTCCCCGCAT 12236 35 94.3 34 .........................A.......C. CCCACCAACCTCCCACTCAAAGGAGGAGGCCTAA 12305 35 74.3 0 T.........A.T........C...C...A..GCA | A [12308] ========== ====== ====== ====== =================================== =========================================== ================== 14 35 97.8 38 CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTATTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATTTGCGCTCTGAAGATTTAGAAAATCCAAGGAATCAGAAGATTAAAGATACGGTTCGTGTTTCCTGTTTACCCACAGATATTATAGTACAAATGAGCCAAATTTATCGCCTTGTTGTTGAGTTGATGCCACTTTCTGGCTTTCAAAATGTACAAGATTATCTAACGGTGAATCAGGAAACGGGCGATCCGATTTAACCTTATTATCTTTACTCGGAATTTAAGGAGTGGGTTGGGCAAATTTTGGATCGCGAGCAATAATCTTGTGGGGGTCGGGCGATCGCTGAAACCCTTATTCTTTCGTTGAAACCCCCGGAAAGCCTTCTCTGTCTAAGTTTCAGCTATTCTTATTGGGGTATTATTGCAAATATATCTCAATAATTTGGGTGTTTGCTTGACCCCCACAAAATTGAGTGCTAGAGTACAGTCAGAGCAAGGGTTTCAACCCGGCACT # Right flank : AAATAACTTGAAAAAATACCCTCAACTTTTGGGTTATTTTGTTAGAATTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTTTTAAACCACTCGATATTCAGCTTTGGGAACGAGCTTTTGCAAAATGCGCTGATGATTAACCGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTTTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCGAAGAATTTGCACAAAACAGGGCAGGCAACCCTTGACAAAATCAATTATTTGTGCAGCTCAACTGTTCTTTGAATTCAACAGGCAGATCGTCCCATCGTTCCCAGAGCAAATCCATCAGCGCCAAATGTCGAAGATCGGTTTGAGTCGGGCGGCGGTAACGTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 17903-17503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTS010000083.1 Arthrospira platensis FACHB-835 contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 17902 35 97.1 40 ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 17827 35 100.0 37 ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 17755 35 100.0 35 ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 17685 35 97.1 37 ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 17613 35 100.0 41 ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 17537 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Left flank : AATCGGTGCAAAATCTTTGGGTTAAGACTCTTTTGGAAGCTTATTGCAAAGACCTTGAAATAGGTGCAATTGGGTATGCTGATGGGGTTGAGACGGTCTTACTAAACACCCCAGCGACACAGTGGGAGAGTATTTTAACAACCTTGAAAGGGCTGAACCAATCACTTTGGGGCAGACAGAAAATTAAACAGTTATTGGAGCGACGGGAGAAACTTAAACAATCTCCTCTGGAGGAACAGGATTTTGATGAAATTTTTCGAGACTATCAAGAAAAAATAGAAAAGTATATTGCCCAACGCAATCGCCGCTCCTATTGAAAAGCGATTGAATTTTTACAAAACCTGAAATCCATTTGCGATCGCACAGGTCAGCAGTCTCTTTGGGATTGTTATATTGAAGTTTTGCGATCGCGTTATGCCAATCTCAAAACTCTATGGCTTGAAATTGATGCTTCAGATTTACAGTTAAAATAAATCATTTTCATTGATTTCAGTCAACTC # Right flank : AGTGCCGAGTTGAAACCCTTGCTCTGACTGTACTCTAGCACTCAAATTTGTGGGGGTCAAGCAAACACCCAAATTATTGAGACATATTTGCAATAAGACCCCAGAAAAAATGGCTCAAACCTTTACTCTGACTGAGCTTTGTGTGGGTCAACGAAATCATCAGGGTTTCAGCGATTCTTCAACCCCCACAATGATATTTACCTTACATCTTTGTTAGCATGGGCCGATAGACTTCCCGCTCTCCCATCAGGCAAGAAATATACTCCCAAACCTGCAACTCCAAACACCGATAATAACTAACCTTGTAACCCGTATGGGGATGAGTGGTTTTCAAAGAAAGCTTATCGTGCCAATGCTTCAGATATTTCTTGAGAGCATCGGAATAAATATAAACCCCACCCCGTTCGTCACTTGGGGTAAAATCTTCCGGGGTAAAAATTCCCGAATTCACCAGATAGATAACGAGAGAATCCACCACCGGGGCGCGAAACTCCTCAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //