Array 1 306072-307319 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDL01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 2010K-1259 NODE_1_length_336852_cov_4.87555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306072 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 306133 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 306194 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 306255 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 306316 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 306377 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 306438 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 306499 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 306560 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 306621 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 306682 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 306743 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 306804 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 306865 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 306926 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 306987 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 307048 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 307109 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 307170 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 307231 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 307292 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 324026-325580 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDL01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 2010K-1259 NODE_1_length_336852_cov_4.87555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324026 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 324087 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 324148 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 324209 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 324270 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 324331 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 324392 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 324453 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 324514 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 324575 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 324636 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 324697 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 324758 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 324819 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 324880 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 324941 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 325002 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 325063 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 325124 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 325185 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 325246 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 325307 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 325368 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 325429 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 325490 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 325551 29 93.1 0 A...........T................ | A [325577] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //