Array 1 1149-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAP01000021.1 Pseudodonghicola xiamenensis strain CGMCC 1.7081 sequence21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1148 29 100.0 32 ............................. AAAGTCAGCACCAGCTACGGCGAGGTGGATGC 1087 29 100.0 32 ............................. GAGACCTGCCATGACTGACATCGTGAAGCAGC 1026 29 100.0 32 ............................. AAGGCCGGGCCGGGTCGGCACGGCGACGGGAA 965 29 100.0 32 ............................. GGTCAATCTCTGCCATATCGGCCTCCGGGGGA 904 29 100.0 32 ............................. ACCATCAACGAAATGACCGCCGCGCTGAATGA 843 29 100.0 32 ............................. CCTGACACGGCTTCGGCCTTGGCCTGTTCCGC 782 29 100.0 32 ............................. CGCCACGCTGATCGGGGCAGCCAACACGCTGA 721 29 100.0 32 ............................. GTATGGCCGAGAGCGCGTAGATCCCGATGCCG 660 29 100.0 32 ............................. CTGCCGCTCGATGAACGTCTGGTCGCCATTCA 599 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : TGGGGCAGATCATCCCGGCCATCGAAGAGGTGCTCTCGGCGGGCGAGCTGCCGCGCCCCGAGCCACCTGCCGACAGCGTGGCCCCGGCTTTCCCGGATGCACCGCCCTCGGGCGATGCGGGGCATCGCTAGATGCTGGTGGTGGTGGTGGCCAATGCGCCCCCGCGACTGCGCGGGCGCCTCGCCGCCTGGCTGGTCGAGCTGCGGGCCGGGGTCTATGTCGGTGATTATTCCGCCCGCACGCGCCAGATGATCTGGGATCAGGTGCTGGCCGGGATCGACCGGGGCGATGCGGTGATGGTCTGGAAGGCGCCGACGGACCAGGGATATGATTTTCTCACCACCGGAAAAAATCGGCGCCTTCCGGTGGATTTCGACGGGCTGAAGCTGGTCAGTTTCTTTCCCGACAAGCGCGGCTGAGGGCCGGGAATTTTCGCCGAAAAAATCGGTACGTTCTTTGACATTGCAAAAAATGTGGTAGATCAATGCTCTACAGGAAGA # Right flank : GCTTGGTCATAGATCCAGCTCGCGCCGTCCCACTGTAAGCGTTGCATCTGACCCCCTGATTGCCCTCTAAACCTGACCACCTCTCGTCCGCTAGTCTGCATCCGAACTACGATCGGAGGCGACTATGGCGGAACGTGAAGTCTGGGGGGTCAAGATCCGGACCTCCCCGTCGGGCAAAAGGATTTGGCCGAGCGAGCTCAAACGCGAGGCGACAAGGCGCCTTCGGGAAGATGGCATGTCGCCTGGAGATGTCGCCGCCGAGCTGGATGCCCATGAATGTCTGGTTAGAAAGTGCTGGGTCGCTGATCGGCGAGAGCGAGGCGAAAAGATCTCCGTCGATGAGCCGGCCTTCGCGCAGGTATCAATCGAACCGACTGTCGCGCCGGTGGCGTCCCAAACTGGAGTGCCCCGACTGAAATGGTCCACCTTTTGGGATAGAATTATCCCGTTTTCAGGAGGACGCCGAGATGGCAGGCAAACGCGAGAAGCCCGAGGATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62161-62789 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAP01000021.1 Pseudodonghicola xiamenensis strain CGMCC 1.7081 sequence21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 62161 35 88.9 29 ..A.-A.T............................ TCGGTTGCGATAGGCCAGACTGGACCCGC 62225 36 97.2 30 ........................G........... AAACGAAAGCAATTCCAGCACCAAATATCA 62291 36 100.0 30 .................................... CTTCGCCCACATCGTTGAGGTCAGCACGCA 62357 36 100.0 31 .................................... GCGGCGTGACCAAGGGCACGTTGACGCTTGG 62424 36 100.0 30 .................................... CCGCAGTGATCTCATGCGTCCCGCCCGCCA 62490 36 100.0 30 .................................... GAAACAATTCGAATACTCCTGATCCACCAC 62556 36 100.0 30 .................................... CGCCGATCCCAGCGCACAGCAGCTTGTTGT 62622 36 100.0 30 .................................... GGGCGTCCCAACCGCCCCGACAGCCGCGCC 62688 36 100.0 30 .................................... TTCCGGGAGCGCTCGGGGTCAATCCATATT 62754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTGCGGCTGGACCTCGAATTCTGAACTGCTATCCT # Left flank : ATGCCCGCCTGCATGGGGTCAAATTCCTCAGCACCCGCATTGGGCTGTGCCTGCCGCGAACGCACCCCCTGGCGGCACATCCCGAAGGCGTGGCGCTGGCCGACATCCTGGAGCAGACCTTTGTGATGCGTGAACGCGGCTCCCGCACCCAGGAAGTGTTCGAGACCAATCTGGCCGCCCATGGGCTGGCGATCCAGAGTTCGATCGCCGTCTCGTCGCGCGAAGGCATGCGCGAGGCGGTGCTGAATGGCATGGGCTGCGGCGTCGTCACCGATCTGGGCTTCGGCACCGATCCGCGGCTGGCCTTCGTGCCATTGCTGGATGCCGAAGAGCGTGTCGACGAATATGTCGTCTGTCTCGAGGACCGCCGCCATCAGCCGCTGATCCGCCGCTTCACCGCCGCCTGCCTGCGCCCCGCGCCGGGTTAAGACCAGCACTCGCCTGTATCGACCCAGCGCCATAAGGACCTTCTTGACCAACAGACACGCGCCCATGTCGAG # Right flank : TCGATATCCACCCAAAGCCTTGTAAACAAAAGGATTTGGGTGGATTCGGGTTGCAGGTTTCCAATCAAATTCCGTCAAAACAGCACCAATTGCTCTGGATTTTTCCGGGCAGACCGCCGCCCCTGATCCGAGAAGTGAACAATGTCACGATACTGGCGATCCGTGAAATTGAGTATCTGGATGTCTCCCTTCGCAGGCAAATGGCGCTCGATCTGGTTGATCTTTGTCTGGAAAGCTTCCTTGCCGTTGACGAAACGTGCGTAAACAGAAAATTGACTGCGCTCGAACCCCTCATCAAGCAGGAAGTTACGAAACTCGGTGGCAGCCTTGCGTTGTGGTTTGGTGTCAGTGGGCAGGTCGAACATCACGAGAATCCACATGATCCGGTATCCTGAAAGATGGCTGGGCTGGCAGGTCATGACCCCAACCCAGCGAGCGTAAGGGCATCGGGGGGTGCCGGCAACGCAAGCGATAGTCTTCCGGTTTCGAAGCTCTGGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAACTGCTATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 37969-37635 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNAP01000010.1 Pseudodonghicola xiamenensis strain CGMCC 1.7081 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37968 29 100.0 32 ............................. ACCGGCGCGCGGCTGGAAATCCCGCTCACGCA 37907 29 100.0 32 ............................. GACTTGGATAGGATGCCGTCCCGGCCTGTCGT 37846 29 100.0 32 ............................. GCGTCCTGCTCGAAAATATCGAGAATGTTGAA 37785 29 100.0 32 ............................. CACGCCGTGGATCTTGAGTGGATCGAGCGAAA 37724 29 100.0 32 ............................. GCGTCCGTATGGGTGTCGTCTGTGTAGAGGTC 37663 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 CTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : TCTGGAGGCTATCGTGGAGCCGTCGTAAAGCTGGGGCATGACTGCGACAGCAACCTACGATTCCGCCTCCAATACCTTCACGCTGAAGATCGGCATGTGGTGGAATGCCTATCCGATAGACGATCTCGGGAGTTGGCTGAAATTCTATCGCGACCAGCGGGTCCGGTTCCCGAAGTCGGGGACTTCCTACGACGGGACCATTGCGGCGCTGGAGAAACTGGCCAGGGAGCGTGGGCTCAGCCTCTAGGGGTGGGTCCTGCGCATGAATGCGCCGCCGGCGCCGGGCTGCAATGGCGGGATGGTCTGGAATGCGCCGCAGGATCAGGGATATGATGGCCTCATCACCGAAAAACCAGCGCCTTCCGGTGGATTTCGACGGGCTGAAGCTGGTCAGTTTCTTCCCCGACAAGCGCGGCTGAGGGCCGGGAATTTTCGCCGAAAAAATCGGTACGTTCTTTGACATTGCAAAAAATGTGGTAGATCAATGCTCTACAGGAAGA # Right flank : TCTCATGCGGGTTCCATCCCGCCCGGTGACGCCCTATGGTGGCGCCCAGAAGGAGGCCACCTGTCTCGCATGGGGTCACGGCAGCCGCTCCTCGGAACGTCCTGAGACGTATGCCGCCAGAGCGAGGGCCGATGACAGACCAACCGCAGATCCACTTTGCGACCTATCTGAGCAACCGCCTGGTGCTGATCGACTATGCCTTCCGGCTGCTGGGATCGCGGGAGGCCGCCGAGGACGTGGTGCAAGAGGCCTATATCCGCTTTGCATCGGGGCCGGAGCACATGCGTCACCCGCGGGCCTATCTGTTCCGGGTTGTGCGCAATCTGGCGCTGAACCTGCGCCGGCGCGATCATTACGAACGTCGTCAGTTGCAGCAGGAGGTGCCAGACTGGGGCCTGCCCGCCGCGTTGCCGGCGCCAGAGGAAACGGTTCGATTCGGCGAGGGGGTGCAGCGGGTCATGCGGGGTCTGTCCCGACTGTCGGAGGATCAGCGCGTGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //