Array 1 455-1546 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JWOU01000016.1 Neisseria meningitidis strain NmHA80132 Scaffold16, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       455	    36	  97.2	    30	........G...........................	TTCCCATCTTACTCTCCCCTTGCCACTCAA	
       521	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
       587	    36	 100.0	    30	....................................	TTTTCATCGTAACATAGTTGCTTGCGCCAA	
       653	    36	 100.0	    30	....................................	ACAATGTTTCGGCGCAACACATCAGCAGGG	
       719	    36	 100.0	    30	....................................	AAGGGGGGTCAGGGGGGTCGGAAAAAATAC	
       785	    36	 100.0	    30	....................................	ATCAAAAACGCTCAATATAAAAAATCAAAA	
       851	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
       917	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
       983	    36	 100.0	    30	....................................	GACGTCAAATCGCGTTACGCCATGGCGCAG	
      1049	    36	 100.0	    30	....................................	AATCGCCTCGAGCCATACGGAATCAAGCTC	
      1115	    36	 100.0	    30	....................................	ATACGAACTCATCCGGAGCCACGCCGAGCC	
      1181	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
      1247	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
      1313	    36	 100.0	    30	....................................	AACCGTCTGCACCGTAAATGTAATTAACTT	
      1379	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
      1445	    36	 100.0	    30	....................................	ATGTTTTTGGCGAGATGGTCGTATGTATCG	
      1511	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   AAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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