Array 1 163923-161201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNP01000027.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016008 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 163922 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163861 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163800 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163739 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163678 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163617 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163556 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163495 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163434 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163373 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163312 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163251 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 163190 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 163129 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 163068 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 163007 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162946 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162885 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162824 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162763 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162702 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162641 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162580 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162519 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162458 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162397 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162336 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162275 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162214 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162153 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162092 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 162031 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161970 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161909 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161848 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161787 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161726 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161665 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161604 29 100.0 40 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 161535 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161474 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161413 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161352 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161291 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161230 29 93.1 0 A...........T................ | A [161203] ========== ====== ====== ====== ============================= ======================================== ================== 45 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182412-180430 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNP01000027.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016008 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182411 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182350 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182289 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182228 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182167 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182106 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182045 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181984 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181923 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181862 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181801 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181740 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181679 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181618 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181557 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181496 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181435 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181374 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181313 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181252 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 181190 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 181129 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 181068 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 181007 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180946 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180884 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180823 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180762 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180701 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180640 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180579 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180518 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180457 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //