Array 1 406-1562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXZ01000036.1 Neisseria meningitidis strain NM1910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 538 36 100.0 30 .................................... ACTATGCCTGTTATTGTTTTCAGCCTTTTG 604 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 669 36 100.0 30 .................................... TTACGTCTATGGTGTCCTTTGAGATGTCCA 735 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 801 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 867 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 933 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 999 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1065 36 100.0 30 .................................... ACAAATAGAAATACATACGCCGAGTAATTA 1131 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1197 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 1263 36 100.0 30 .................................... ACGTTGATGACGGATGTGTCGGGTTGCGGA 1329 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1395 36 100.0 30 .................................... ATTTAACTTTGACCGTGTGCAATCCAGTTA 1461 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1527 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TTTTCTTTTTGTAATTGTTCTGCCTTTTAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //