Array 1 132-1420 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPJ01000028.1 Pseudomonas aeruginosa strain CL297 CL297_NODE_15.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132 28 100.0 32 ............................ AATCGGGGCTTTCTTGATATCCGTCCAAGCCT 192 28 100.0 32 ............................ TTGTTGTACAGCACCTGGTCCATCAGCGCGCT 252 28 100.0 32 ............................ ACCGCCACGCCGCAGCAGATCATCGACTTCTT 312 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 372 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 432 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 492 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 552 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 612 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 672 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 732 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 792 28 100.0 32 ............................ TGCAGGCGCTGCGCGCGCAACTGGAGAATGGC 852 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 912 28 100.0 32 ............................ TCGATTCCTTTATCGCAGCGCGGCATGCGGAA 972 28 100.0 32 ............................ GGCAAGGGCTACATGAACGTCACCACGGCAAT 1032 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 1092 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1152 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGAGTAG 1212 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1273 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1333 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1393 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-759 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPJ01000003.1 Pseudomonas aeruginosa strain CL297 CL297_NODE_34.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 192 28 100.0 32 ............................ GCTTCACGCCCGTCATCGTGCGGCAGGCTCGC 252 28 100.0 32 ............................ ATCTCCTTCTGCCGGTTGTGATCTTTATTTCA 312 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCCTCGAAGATTTT 372 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 432 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 492 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 552 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 612 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 672 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 732 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10091-9283 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPJ01000003.1 Pseudomonas aeruginosa strain CL297 CL297_NODE_34.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10090 28 100.0 32 ............................ TGCTGCAGAAGATGACCGGCGGACCACCACGC 10030 28 100.0 32 ............................ TGCGGTTGGTGGCCTGAGATGCTGCGCGCTGA 9970 28 100.0 32 ............................ GTGCCGAGCTGACCGACAACAACAAGGTCAAG 9910 28 100.0 32 ............................ AGCCACAACGGCGAGGCGCTAACAAGGATCGA 9850 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 9790 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 9730 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 9670 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 9610 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 9550 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 9490 28 100.0 32 ............................ ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 9430 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 9370 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9310 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //