Array 1 97220-96040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045227.1 Nostoc sphaeroides CCNUC1 chromosome Gxm2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 97219 37 100.0 33 ..................................... GTTGCGAGAATTGCAAGCACTTTGACGTGGATG 97149 37 100.0 33 ..................................... AGTCCTGAGTAGCACTTCTCTGGGAGGCATACA 97079 37 100.0 38 ..................................... TTGAAAATTCTTTGGGATAAAAAAGATTTCACTGTTGA 97004 37 100.0 33 ..................................... AGCAGGAATGAATAGGCTGAAGCGTTTGTACAA 96934 37 100.0 33 ..................................... AGGCAATACTTTGATTGTAGCCAATCATCTTGC 96864 37 100.0 37 ..................................... TTGAAACTGACTTTGCTGCTGCGGTGAAATTTGGGAA 96790 37 100.0 33 ..................................... GCTTTTTAATCAGGTCTTTGAGCGACCTATAAA 96720 37 100.0 34 ..................................... AAATTTGTACATATTTTATGATGTGGATTATTCA 96649 37 100.0 34 ..................................... AAGTTCCTGTAGCCCCATCTGGCAAAGCAATAAC 96578 37 97.3 34 ..............C...................... GGGATCACAAGCGATTCAAGATTTAGGATTGGCG 96507 37 100.0 42 ..................................... CGAACTACGCAAAGAATACCAGCCGTATGGGCGTAATCCAGA 96428 37 100.0 34 ..................................... GCCAACTCCGCAGGCGATCGCAGGTAGACAATTG 96357 37 100.0 34 ..................................... GTCAATCTTAGTCATCTCATCAAGCAACTTGATT 96286 37 100.0 34 ..................................... AGAATAAGAAGAGGCGACAGGAAATAAGCAGGAG 96215 37 91.9 34 ............T....................G..T GTGTTGAGAAAATTAGTGGGATCGCGGCATTAGA 96144 37 75.7 32 A..G......G.TC...AT.T...............T GGGTTTTTGGATTATGGTCTTGGCTCTCCCCG 96075 36 73.0 0 A..G.......T-....AT.T..CG.......A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 96.3 35 GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Left flank : GGATGGGGTGCTGGTGAAGTGGAATGAGTAGCGATGCCTACGGCAACCTGCTTTCATGAATGCTTTATTATCATCTTTCAACTGGGGAAGTGGGATGAGTAGCGATGCCTACGGCAACCCTTTCAGAAAAAGCCCTTTCATCACTAGCATATTCTAGTACAGCAATCGATTTTGAGATAGCGTAACTTCACAAGGTATAGCTATTTATATCGTTATGATATGAAAAGTTCATCAGCTCACTGGTGAACACAACAAGATTATTTTCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAAGCAAAAATGGGGAAAGGGGTTTCAAATGCGCCTAGTGCAAGAGTTTTAGCCAAAATAGTTGCTCAAGCACCCGCGCACCTTACACAGACTAAGTTTTAGCTATTTCTTTACTACTCAATCTAAATTCTCCATGCTATGATTGATCTATCCGCGCATCGGAACCTTGAAAACCTAATAAATATAGCTTTTTGGGCTTCTGTG # Right flank : ATTATTATTAATAGAGTTTTAACATTTTTATATATATTAGGTAAATGCAATGAAGGATAAATAAAATGGAAAGAGCAGTTTTATTTGATATTGATGGAACTTTAACAGTAACAGTTACAGGTGAAACTTTTAAAAAGAATCCTCATGATGTAGCTGTACTGCCAGGTGTAAAAGAAGGTTTAAACCACTATCATAATCAAGTGCCTCCGTGGATATTGGTAGGAGTAAGTAATCAAGGAGGTATAGATAAAGGCTATAAATCAATTGAAGATACAGTTGCAGAAATGAAATACACGCTAGAATTACTGCCCAAGCTCTCAGCAATTTATTTCTGTCCAGATTTACAAGGAATAAATTGCTGGCGAGTAACAAGTAATGCATCTGTGAAAATAGCAGATTATGGGACTTCCAAAGAATAAATCATTCCAAAAAAACAAGAGACAGGTTTTCTCAAGAATGATAATCATTTTAAGGGGGGGGAGAAAAGGGTTGCCGAGGGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 2107339-2106865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045227.1 Nostoc sphaeroides CCNUC1 chromosome Gxm2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2107338 37 100.0 37 ..................................... CTTATTGTTCAAAAAAAGCAGCACCTACAAATGATTT 2107264 37 100.0 35 ..................................... ATGAAACACCCTGGTATGGTTAGACATTCTCAAAG 2107192 37 100.0 35 ..................................... GTGCAGGGGTTGGAGGGGCATTGAATGTTGGGGGA 2107120 37 100.0 36 ..................................... GAGCTAGAATCTAAACTTAACCTCAATTACTCTTGC 2107047 37 100.0 35 ..................................... TGCGCTGGTCTTGGAGGCTCAATAACCTCAAAGCG 2106975 37 100.0 37 ..................................... ACTAACTCAGCAGTTTGATTTAGGCTGACTTCCTGAC 2106901 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TTATTTGATTATTTATGATTTGCCTGATAACAAAGCTGCAAATAAACGTCGCACTCGCTTACATAAAATGTTGTCTGGTTACGGGAAATGGACACAATACAGTGTTTTTGAGTGTTTTTTAACAGCAATACAATTTGCCACGCTCCAAACCAAGATAGAAAAATTGGTTAAGCCTGAAGAGGATTCGGTACGATTGTATGTACTCGATGCGGGCGCAATCAAACGAACAATTACGTATGGTTCCGAAATTCCTCGACAAGAGCAAACAATAGTCTTATGATTATGTAATCAGCTTGATGATTGGCAAGTCGAAGCGGGGGCTAAAACTCTGGGGGATCTGCCAAAATCGCCAGAACCTTGACAAATTAATAACCACAGCGTTTCAATAATTCGGGAAGTTGCAAATTAGTTGCAATAAGGCAGGCTGAAAATGACCAAAATTTTCGATCTGCCAAAAGCATTCCCAGGAAGCCTGCTCTGTAACAGTTTCAGACCGAGCG # Right flank : TTTAATGTTAAACGTAAGTTATTTGCGAGAATTAAATGTTTCCAAAAGAACTCTTGCAAAAGTGTTTTATGGTATAATCGAGAGTTGGGCAATTTGCAATTAGGACTTTGAGGAGCAGTGAAAATAGAGAACGCCAAACAGCTTACTGCAAAAAAATTTAAGCGAATGGCTGGAGTGAGCCGTAAAACCTTTGAATTAATGGTTGATGTAGTTAAAGCTGATGCTCAAAAAAAGAAGAAGCCTGGTCGCCGTCCTAAATTAACTATTGAAGACCAAGTTTTAATGGTGATTCAATATTGGAGAGAATACCGCACTTATTATCATATTGGATTAGACTGGGGACTTTCAGAATCCGCAGTTTGTCGGACAGTTTATAAGATTGAAAATATATTAATTAAGTCAAAAAAGTTTAGTTTACCTGGAAAAAAAGAATTATGGAAAATGTCATCCGAGGAAGATTTAGTTGTCATGGACGTGATGGAAAGTCCAATTGAAAGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 3 2134391-2133390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045227.1 Nostoc sphaeroides CCNUC1 chromosome Gxm2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2134390 37 100.0 41 ..................................... AAGTAATTCATGTTTGGCTGGGTGTAATTAATGAGCAGTTG 2134312 37 100.0 39 ..................................... GTCTATTTGTTTCGTTTCCCGGCAGCGCCACGCCGGCGG 2134236 37 100.0 35 ..................................... CAAAAAATAGCATCTATTAATAATTTTAAATAATG 2134164 37 100.0 35 ..................................... GAAACGGAAGGGATGGAATTGATGTGAATTCAGCA 2134092 37 100.0 37 ..................................... AGTCAACATGAATTAAACTTAGCTGATTTTCATCCAT 2134018 37 100.0 36 ..................................... AAATCAACATGGCTAAAGAGTCTAAAGAAGAAAAAC 2133945 37 100.0 35 ..................................... ATATCTGCTCCTTCCTGGAGTGCATCGCTAGTTAT 2133873 37 100.0 35 ..................................... TTTTAGTACCATTATCTCCGCTTGCAGAAGCCCAA 2133801 37 100.0 40 ..................................... AAATAATCAGCACCACCTTTAGCATAGATAAGCCTTCCGT 2133724 37 97.3 36 .......T............................. CATACTTATCAGCAAGAAGCGATCGCACAGCTTGAG 2133651 37 97.3 36 .......T............................. AAACCCTTACCAGCAGCCGTCCAGCTATCGTAAACT 2133578 37 97.3 36 .......T............................. TTGCAAAGCTAGCTACTTCTTTGCCTCCAACGTAAA 2133505 37 94.6 41 .......TC............................ AGCAAACTATACGGCATATCAACAGACAAACACTCTTCCAG 2133427 36 78.4 0 .......G-......T.....G..A.....T.A...A | G,A [2133397,2133410] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 97.5 37 GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : GTGGGATGGCGAGTACACCATTGGGTTACAGCACCTGAAATCTTACAATTACTTACCTGCGGAGTGTAAGCAGATGCAGGTGATTTGCGATCGCGTTGCTCCCATATATTCAGATTCGCTGGAGGAGACAGTTAAAAGTCTGTTGCAGTCGTTGGGGAAGGTAAATCGGGCTTATTTAACGGCTGTCGAAGAGAAATTGTTGAGTTTGATTGAGCGAGAATACGGGCTTATAGATCAATCTTCATAAACTCATAGACAATAATAAATACACATCTTATGATTATGGAATCAGTTTGATATTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTTCACAGTTTCAGTGCTAAGGGAAGTTGACATTTAGTCGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTTTGCCAAAATGCTTCCCAGGAAGCCTGCTCTGTAACAGTTTCAGCACCGAGCG # Right flank : TCTAAAGATTAAGCAGGGTTTTCCTGGCACAATTGATTAACAACTCTTTCGATTTCCTGTGTCATCCAATCAGATCCGGTCTGTTGGTAAACCTGAACTAATGATTGGTAAAACCACAAAGTTTTTTCTCGACCGGCACTAAAATTAGTCCAGATAACATCTCCATGTTGTTGCCAATCAGCTAAAAGTGATCTGGAATTATGGAGTTTGTCAGCCAGAGAAACTAAGCGTACAGAAGGTGAAGCAGAACGGAGATTATTGAGGTAATGCTGCTTACGTTCTTGCCAGGGAGGTTTAGGAGGTGTGTCCCACTCAGTACAGCCATCGATAATAGCCAAAACTGTTTCACCAAAGAGTTGACGGATATCCTCACGAATGGGTTTGCCGCCTTGGTCTTCGACTGCATCATGCAAAAGAGCAGCGATCGCTTCTTCTTCAGTAGCGCCACCTTCTAAAACTAAAGCCGTTACACTTAACAGATGTGAAATGTAAGGAACGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : GTTTCCATTAACCAAATCCCCTCACGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 2138627-2140944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045226.1 Nostoc sphaeroides CCNUC1 chromosome Gxm1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2138627 37 100.0 34 ..................................... GAACTGCAAGGCGGTATTATCGCAGAAACAAGAA 2138698 37 100.0 35 ..................................... CACTTATATCGGCAATCCAGAAATATCTCCCCCAA 2138770 37 100.0 35 ..................................... TAGAGTAAATCGAAAAGCATCTATGTATCCATTGA 2138842 37 100.0 37 ..................................... CTGAAGTAGCGGAAGGACGCAAAACCGAAATAGCAAA 2138916 37 100.0 34 ..................................... AATCAATACGTTTAACCCCAATATACTACGTTAT 2138987 37 100.0 36 ..................................... GGATTACTCGAACTTCTTCAACTGGAACATGATGAG 2139060 37 100.0 35 ..................................... GTCAGGATTACCCGGTAAACATTCGCCAAAGGATT 2139132 37 100.0 36 ..................................... AGCAGAATTAATGCTGTGGCAAATGCAACAACTCGA 2139205 37 100.0 33 ..................................... GATAACTAATGAACCGTCTCCATGTAGTAATGC 2139275 37 100.0 34 ..................................... TCCTGGGGAACCTGCCAAAAAGGCGGGAAGACCA 2139346 37 100.0 37 ..................................... ATCCATTCGTATTCTTCTTCAAGTAGATTTGTGAATG 2139420 37 100.0 37 ..................................... AAGGGCAACATTTACTGATGGTAAAATTACCAAAGCT 2139494 37 100.0 32 ..................................... ATCTCTGTTTTAGTTGCAGTTTGGGCGGCCAA 2139563 37 100.0 31 ..................................... GAATTATCGCTAATTACATCACCTTTCTTAA 2139631 37 100.0 34 ..................................... TCAGATAATAAATTCTCTGCTATCTGCTTGGATA 2139702 37 100.0 33 ..................................... TAGAAAGTGCGATCGCCTCCGCATTCCCAAAAG 2139772 37 100.0 36 ..................................... TTTGTATTGGGGCGAAACGAACAGCTGCATGGCGAA 2139845 37 100.0 34 ..................................... CGGGTACTGGGTAGCCCTGCATCCTACCACTTTT 2139916 37 100.0 33 ..................................... ATTGATAGTAAGAAATTATAAATAAATTTAATA 2139986 37 100.0 35 ..................................... GTGGTTGCCCTGCTGTAGGAGTGGGGCCTAAAAGA 2140058 37 100.0 32 ..................................... AGTCTTTTGAGTGGCAGTACGACAATTATTGT 2140127 37 100.0 37 ..................................... CCATTGCTTCTTTCATTTCCCACTGTTGATCTTCGTC 2140201 37 100.0 34 ..................................... GCACTGTAGCCGAAGTTTTTTCCTCTAAGAATGG 2140272 37 100.0 32 ..................................... CAGCAGCGTGATGCTCTTGTACAGCGCAAAGC 2140341 37 100.0 34 ..................................... AATGAAATTGCTAATTGTGCCAGCTGATAATCTC 2140412 37 100.0 35 ..................................... CTTGCTCCTCAACTTTCTGTGAGGCAATCTGTAAC 2140484 37 100.0 35 ..................................... AAGCTTCACGGCTCTAGGTTGGGAGCTACTGTAGA 2140556 37 100.0 35 ..................................... GGGTACACCTATATTATAACTTGTTATAGTGCGTG 2140628 37 100.0 34 ..................................... TCATATCCCGCATCGACTGAATCATTTGCTCTTG 2140699 37 100.0 33 ..................................... TCGCCATCACTCACCCTTACCACTTGCCATTGC 2140769 37 100.0 34 ..................................... AGGGATTAGCGGCTTTGTGCTTGAAGTTGGTGAA 2140840 37 100.0 31 ..................................... ATAATTTACGCTCATTCTTATGCATTAAAAA 2140908 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 33 37 100.0 34 ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Left flank : AGCTTTATCAGTTTATATCGTCTTGCTTGAAACAAGTTGACCGCCAAGATCGTTTTATGTTTTCTCTGCTGTTCATAGAATTAACAGACCTCATCCGCAATTCTTCCCTAGAAAGGGGAACGAAAGAGGTTTTGATTAAAACAGCTTTTAGGGAGTTTGCTTGTGCCATAACAGACTTTGAAGACGTTGCCAAGTAAGGTTGATCAGCCAACCTAATCAAGTAGGATATTTATAAGTAAGCAGCTTTTCCATTAGATTAGTTTTTTCGCTGTATGCGCGGACGGGTAGGTGTTCAAGAAGGAGTGACCACAAAAATGGCTGAATTGCCCTATATGCAAGAACTTGAGAGCGTTAGCATTTCTAAACCATCCGCGCACCTTATGGGGACTAGTTTTCAGCCATTTGCCTCTAGCCAATTCACAACTCCTCGTGTTATGATTTCTGCATTCGCGCAACCGAACCTTGAAAACCAAATAGAGCAACACTTTCACAAGCCAGCG # Right flank : CTCTTGGAGAAGCTACGCGATCGCATCCTATCAACCAATACAGTTCAGTTAAGGATAATCGTAGGTTGGGTTGAACTTTAGTGTTACCCAACAAATTCTCATAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCAGTTTAAGGTTTTTGGCTCTAACCCAAGCGTATTGTCCTATCAACAAAGTAAAATCCCCACACTTAAGACAGGGACTATAGGCTGACTCTAAGCAGCTATTAATAGTAATTCATAATTCAAATAGCGTTTAAGATTTATGAATTAAGAATTAATAATTATTTAGTCAACTAAGATACTTTCGGTTGCTGCCATAGGATGAGTTTCAATTCAGAGCAATAGCAACCCCCACCGCTAATTTCTCCTTCGTGGTCAGCTAGCCAATCATAAATTTGTGTAGCTTTTGCTAATGCCACTTTTTCTGATCGATAAAGTCGAGGAGTAGGGCAGTAGGCTTGGCCATTGATGTGTATAGCTGCAATCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 5036399-5036791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045226.1 Nostoc sphaeroides CCNUC1 chromosome Gxm1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 5036399 37 100.0 34 ..................................... ATTTGGAATTATTTTACCAGAAATTCAAATAAAT 5036470 37 100.0 33 ..................................... CTGATATCGACCCTGAAACTTGTGATGAATGCT 5036540 37 100.0 34 ..................................... ACACGGTTCACGTAGTTCACAGTGAAGGTGTAAT 5036611 37 100.0 35 ..................................... ATCAATGAGCAAAGTTACAGCAGAATTTAGCGAAC 5036683 37 100.0 35 ..................................... CGAGAATATACAGTCCGCGCTCATAAAAGACTAAT 5036755 37 91.9 0 ...............T......CA............. | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 98.6 34 GTTACAATGACCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : CGAGATTTAGCGATCGCTGCTTACCATTTTCGTCAAAATAAATCTTAATCTTCAGATTGAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGTAGTTCATGTTCTTTGTAACCGCTGAACTATGAAAAATATGGGGTAGTTTGACTATTGGAAGATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGAATAAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACTAAATCACCTCCGACCAAGGAGGAACCCATACCAATCCTTGTTTTCAGGCACTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGGTTTTAGCGTTTAATGGCACACAAATTGCCCATTCAAACGGTAGTTGAAGAAGCATGGAATATAGATCCGCGCTATCAACTCTGGAATCCTTCACAAAACAAGGATTCTATACAGGAAGG # Right flank : GAAAATTTTCTATATCGACCCCAAGTGCGATGGTAAGTTACAATTCCTTCCGGCAAAAATGGATTGAAGATGTAATACCTAACGATGAGCAAGAAAGGACAAGTTATATAAATTTTTCCAGTGCAGGGCTGGTGAAAATATAAAGATTACGAGATATGGGTATGGGTTGAAAGGGTTCAACTCCAACCTGCTTAACTATAAAGAACAAAAGTTCTCTGTTTAAGTAAGGTAGAGTAAAAGTTTTTAGAGCTTAAGTTAAACTTAAGCTTATGGTCTTCTATTTGGCAAATCTGATGTTGACCTGTCACCGCACAAAGTCGATAAGTCACTAATATTGCGACATTAATTTGTGAACGGTTGTCTCAAATGAGCTACGACAACAATTAGTGAAATAGCGACATTAATGTGTGAAAAACGACATTAATTTGTGAACGGCGACATCTAATTTGTGAATGTACATAATTTCACTTATCGCTCACTACTTATAACTTTTAAAATGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATGACCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5508826-5507926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045226.1 Nostoc sphaeroides CCNUC1 chromosome Gxm1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5508825 37 100.0 35 ..................................... ATTGATGGCTTTAATCCAATACCAAAGGAAGATAG 5508753 37 100.0 34 ..................................... GTGAAACTTTGATTTTCATAACCCTTGCCTTATC 5508682 37 100.0 35 ..................................... TCCTAATTTATCGGTTGATGGATGGAAGGAATTAT 5508610 37 100.0 34 ..................................... TTGGTATGAAGCCGGGTAATATCAGAGTGATTAT 5508539 37 100.0 34 ..................................... GAGGTAGAGGAAACAACGCACAGAATAAAAATAG 5508468 37 100.0 34 ..................................... AAAGATAGAAGTGAGTGTAAAGACCTATTAACTT 5508397 37 100.0 33 ..................................... TTACGGTTGCTTTCTCTTCTTCCTCATGCCAAT 5508327 37 100.0 36 ..................................... TGAGTTCGCCCAACCTTACGAACAATGGCGCACGAG 5508254 37 100.0 40 ..................................... GCGTCTGGCCAGTGGGGTCAGGGTCGCGGCGCTTATGCAG 5508177 37 100.0 35 ..................................... AAGGGTGCTTATTCAATTACAAAAAATCCTGTAGG 5508105 37 100.0 34 ..................................... CCAGTATTAGGTTCAGGAACGATCGCACCTAAAA 5508034 37 100.0 35 ..................................... TTCCAAGAAAAACTTAAGCACACTTTTTTCTTGAA 5507962 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCGGTTCTCAAGTCTTACGGGCAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCTCACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATTAAACCCGATACCGATAGCGTTCGTTTTTATTTTCTCTGTGGCTGTTGTCAGCGAAAAGTCGAACGCATTGGCGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCTCCTTCTAGCTAGGTTTCTGTATTTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGCCCCAAAAAAATGCTTCTATCTCAACTCCAGCAAGGCTTTCAACCTATTAGTCGCCTAATCCTCATCCGCGCAACCTTTGAAATGCTTATCAAAATACGATTTCAGCCTTTAAATTTTCCTGGCACTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGTTTTAGGCTCCCGCT # Right flank : CATATTCTCATGTGCCAAAAATCTTTAGTCTACTTCAGTAGACTTTAGCTAAAAGCCAAAGAACTTTAGTTACAGGCGGGTGAGGAAGCTTTCAGTTAAGCTACTTTTAGCTTAAATTGACACTTATGGGCAATACCATTGCCCAATACTCAATACCCCCCATTCAAAATTCCAAAATTACCGGCGTATGGTCGCTGGGTTGGGTTAATTTTCTAGGCGCAACATCGATAATGCAACTTGTAGCACGCTCATACAGAATAGGTGTGAGATAGTGATGGTCAATCCGCCAACCTAAGTTGCGACGGAAGGCGGCGGCGCGATAATCCCACCAGCTATAATTTCCGCCTTCTGTGGTGAACTTGCGAAAAGCGTCAGCAAACCCCAATTTCAGGATATCCCGTAAGGCTTGGCGCTCTGCTTCTGTTGCCATAATGTGATTTTCTGTACTCACTTGTTCGTGAATATCCTTATCTTCTAAGGCGATGTTGAAGTCACCGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //