Array 1 182533-183427 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESZ01000011.1 Dickeya dianthicola strain SS70 SS11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 182533 32 100.0 33 ................................ TAGAGGAGTTAGAGGCTAGGACGTACAAGCAAG 182598 32 100.0 34 ................................ TTTTTTGAAAATACTGCTTGACCCTTTTTGGGAG 182664 32 100.0 37 ................................ ACTCATCACCTGACTTGCTTTCTTGCGTGCTTCTCTG 182733 32 100.0 34 ................................ TACGACGCTTGCATGGTGTATTACAACGCTAATG 182799 32 100.0 36 ................................ AACAAACAGGTTGACAGTTGCTAGGAAACTAAGCAC 182867 32 100.0 34 ................................ TTCGTCAGTTGCCTGTCCATCTTGATGTCGCCAC 182933 32 100.0 34 ................................ TATGCTGCTGCTATGGCGTACTACAACGTGAATG 182999 32 100.0 35 ................................ GGTTTGGGTTTCACGGGCGGCGACATAGGCGGCAG 183066 32 100.0 35 ................................ TCTGACCTACAACCTTTCGGTATTCTCAGTGAGTA 183133 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 183199 32 100.0 35 ................................ CGCATGCAACCAACCCCGCTGCCAATGGTAGTACT 183266 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 183331 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 183397 31 81.2 0 .....................-AC....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.7 35 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : TGATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22776-20945 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESZ01000005.1 Dickeya dianthicola strain SS70 SS5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22775 28 100.0 32 ............................ ATGCATATCGGGAGTGGTTCATAGACAAAGAC 22715 28 100.0 32 ............................ TGATAAAATACTGGTGCTCTCTGATAACCATG 22655 28 100.0 32 ............................ CCTATAAAAGAGAGTCGAGCGGTGAGCCACAT 22595 28 100.0 32 ............................ TCGGACTGACTCTCATTCTTCGTGTCGTCTCT 22535 28 100.0 32 ............................ GAGCACCACACGCAGAGCGTAGCGAACGAAGG 22475 28 100.0 32 ............................ GCCTGCACACCCCACCACACCCACCGAGCACC 22415 28 100.0 32 ............................ GTGTACCGTACGATGATGGGCGTAAAGTTAAG 22355 28 100.0 32 ............................ GGCGAGTGGGTGGATTAAGGGGTGGTATATGC 22295 28 100.0 32 ............................ TTCCAAAGGCAGCGTGATTTCTGCCAAGACAC 22235 28 100.0 32 ............................ TATCACCAAGGAGTACTGCCATACTGATTGTA 22175 28 100.0 32 ............................ AGAGAGTCCGAAGAGAAGCAAGCAGAGAGAGA 22115 28 100.0 32 ............................ TCCCGCACACCCCACCACACCCGAGAGACGGC 22055 28 100.0 32 ............................ TATGACGGTGCTTATGCCCGTGCTGTCGCCGC 21995 28 100.0 32 ............................ TCACCTGCACATCCTCGGCGAACGCTCATAAC 21935 28 100.0 32 ............................ GTGATTATATCGTCACGCATAACAGTGCATTC 21875 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 21815 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 21755 28 100.0 32 ............................ AAATCAGACGCGCATTCTGTCGGTTGTCGGGA 21695 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 21635 28 100.0 33 ............................ TGCGATACGCCAGCCGAGGCGGAAACGTCAGTA 21574 28 100.0 32 ............................ AGAGGCGTGAAGCCTCCAGCCGACGACAAGAA 21514 28 100.0 32 ............................ AACTGGGACAAAGCGGTTGCCGAAAACAAACA 21454 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 21394 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 21333 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 21273 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 21213 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 21153 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 21093 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 21033 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 20973 27 85.7 0 ....................A..-..CG | GG [20950] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31491-31819 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESZ01000005.1 Dickeya dianthicola strain SS70 SS5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31491 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 31551 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 31611 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 31671 28 100.0 32 ............................ AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 31731 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 31791 27 89.3 0 .......................-..CG | GG [31812] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCGCAGGCGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //