Array 1 477033-478932 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMON01000003.1 Salmonella enterica subsp. enterica serovar Singapore strain VA-WGS-00353 NODE_3_length_523938_cov_43.1814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 477033 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 477094 29 100.0 32 ............................. GTCGAACCATGTATTTGCGTTACCGCTTGCAA 477155 29 100.0 32 ............................. GCTATTACGGCGACACCGCGCTTGTTGTCTAT 477216 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 477277 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 477338 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 477399 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 477460 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 477521 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 477582 29 100.0 32 ............................. TCCACCGCCTGGCGCTTGAAGGTGAGTTACTG 477643 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTAACCGG 477704 29 100.0 32 ............................. ACGGTGAGCCGCGGCTACATATCAAAGAGCAG 477765 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 477826 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 477887 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 477948 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 478009 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 478070 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 478131 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 478192 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 478253 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 478314 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 478375 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 478436 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 478497 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 478558 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 478619 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 478680 29 100.0 75 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTGGTGTTCCCCGCGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 478784 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 478844 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= =========================================================================== ================== 31 29 99.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495215-496771 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMON01000003.1 Salmonella enterica subsp. enterica serovar Singapore strain VA-WGS-00353 NODE_3_length_523938_cov_43.1814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495215 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 495276 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 495337 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 495398 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495460 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 495521 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 495582 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 495643 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 495704 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 495765 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495826 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495887 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495948 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 496009 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 496070 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 496131 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 496192 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 496253 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 496315 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 496376 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 496437 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 496498 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 496559 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 496620 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 496681 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496742 29 93.1 0 A..............A............. | A [496768] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //