Array 1 9933-10563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWX01000060.1 Shigella boydii strain 1252_SBOY 180_24314_381113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9933 28 100.0 32 ............................ GCCTGGTGGGCTTCCAGTTCGTCGGCCTCGAT 9993 28 100.0 32 ............................ CAGCTGGGCGGCGAAAACGTAAACATGATGCT 10053 28 100.0 32 ............................ GACGCCATTGCAACCGGCAGCGAACCGCCGTT 10113 28 100.0 32 ............................ ATGATTAAATCCAGATCGCCGGTATAGTCCAA 10173 28 100.0 32 ............................ CGGGCGTGTCGTGTGACCGACGACGCAATCGC 10233 28 92.9 32 CC.......................... AATCTGGATCGGAAATGGCGTCAGCGTGGTAA 10293 28 100.0 32 ............................ TCGGCGTGCCGGGTCTCGATTCCCTTGAGGTT 10353 28 100.0 32 ............................ ATCTGCTGGTATCGCGGGTCGTTTGGCCCTGG 10413 28 100.0 32 ............................ TGAATTTCGGTGGTATCGGTCATGATTTAATC 10473 28 100.0 32 ............................ AATACAACCTGGCGGGCAACTATCACACGGAT 10533 28 96.4 0 ....................A....... | A,A,G [10553,10556,10559] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGTTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCACCGTTTAATCGCTTCTAGCACTCGGCAACAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTCTTTTGCTCAGCTGGTTGAGCTGACAATCCAGGTCTTCTGTGGTGTCTATGCGTCTGAGAGAAACGGATGGTGATACCGAACAGGGAATCCAATAATTCCCCCCTAAAAATGCAGACACGCCACCTTACTCCGTTCTGGGTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTGTTTGGTACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCTTGGAAAAACGTGGTAGAACGTTGGTGTCGTCGGCATTGATCTGTATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGTCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCAGCGAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19039-20737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWX01000060.1 Shigella boydii strain 1252_SBOY 180_24314_381113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19039 28 100.0 32 ............................ CGGGGTTTCGCGGCAAGTATGCACTGGACGGC 19099 28 100.0 32 ............................ TTGATAGGGCCGACACGACCGTCGACGCGAAC 19159 28 100.0 32 ............................ AGTGCAGCGCTCCGCAGCTAGGGCACGTCGCA 19219 28 100.0 32 ............................ ATGTCGGCGATGCCAACGAAAAGGCCGCAGAG 19279 28 100.0 33 ............................ TTGGTTCTCTTGATGAGGAAGTCATGCGCTTTA 19340 28 100.0 32 ............................ TTGCGCCTAACCACCTAACTGAGCATGCGAGG 19400 28 100.0 32 ............................ AGAAAGCCCCAGCGCATCGGCCACAGCGCCAT 19460 28 100.0 32 ............................ AGATAGGTGAGATGCCGGCGTTAACCGGCGAT 19520 28 100.0 32 ............................ GCCGTGAATCGCACCGCCCTCGGGTACACGTT 19580 28 100.0 32 ............................ GTCCCGCTCGGGTCGATTCGGCCGGTTTCTGC 19640 28 100.0 32 ............................ ATGTCGCCGTTGAGGCCCATCGCGGCGTCGGC 19700 28 100.0 32 ............................ ATCAATTCCTTCGATAGTGTCGGCGATCATGT 19760 28 100.0 32 ............................ CAAGTAATCAATATCCACAATTCGCTCTTGAA 19820 28 100.0 32 ............................ TCGACTATACGAACATAATCGACCCACGTATC 19880 28 100.0 32 ............................ TGAAATTCATCGCGCACCGCACGCGCAGTAAT 19940 28 100.0 32 ............................ CTGCGGTTGCCATGCTGGCAGACGCCGATCGC 20000 28 100.0 32 ............................ GAAAGGCAGGGGGAAGGGCAAAGGGCGACGGC 20060 28 100.0 32 ............................ GCAGAACAACGCCCAAACGCTGCAGGTAAAGC 20120 28 100.0 32 ............................ ATCGGCGCGTTGAAAGCCATGGGCGAAGAGGT 20180 28 100.0 32 ............................ AGACCCCTCATGCGTTCGGTTCGCAAATGCTC 20240 28 100.0 32 ............................ AGACTAACGACACCAGGCGCTTAATAATTTTT 20300 28 100.0 32 ............................ TCCGGCGCATCGAGCGTGATTTTGTCAGCCGT 20360 28 100.0 32 ............................ TGCAGGCGCTTTACATACTCGTCGGTTACTGT 20420 28 100.0 32 ............................ TATCCCCAACCCATCTAACCGAACATGCGAGA 20480 28 100.0 32 ............................ AATGCCACTACGTTAAGCCGGTCGGCGTCTAC 20540 28 100.0 32 ............................ GGCCACCAGTCCCGCCATCAGCTCGGAGAGAT 20600 28 100.0 22 ............................ AGCCACAGCACGCCAATCGTGA Deletion [20650] 20650 28 75.0 32 CGA...A.T....C.............G TTCTCATAAGAATACGTCTTCGCCTTACTAGT A [20655] 20711 27 75.0 0 ..GT.......C.C......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCCCGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGCTCATTAGTGATTTTTTTGTTCT # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCCGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAACGCCGTTGAGCGATCTCCCACCTGGCAGTGAAACGCCAGCGTTAATTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAGACGCAGCATGTAGAGGTACCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCTTACCGCTTTACCCCTGTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //