Array 1 9146145-9143573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069526.1 Amycolatopsis sp. FDAARGOS 1241 strain FDAARGOS_1241 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9146144 29 100.0 32 ............................. CCGTCCGGCAGGCCGAACGCGTCGTCGCTGCC 9146083 29 96.6 32 ............................A GTCAGGTGACACCCAGCGGTGCCCATCGGGAT 9146022 29 100.0 32 ............................. TTGGCACCTGACACGAAATTCGCGCCCGCGTT 9145961 29 100.0 31 ............................. TGGACGTGCCCGGCATCGGCGAGGTCCCGAC 9145901 29 100.0 32 ............................. GAGTACCCGTGGCCGGGTCTACCTGGGATTCG 9145840 29 100.0 32 ............................. CGCCGCGTCCCGGATGCACAGGAGAAGACCGA 9145779 29 100.0 32 ............................. TACGCACGCCGAACGGGCAGCCCGCCGCGATC 9145718 29 100.0 32 ............................. TTCTGCGCACACCGCCGGATCGGTAGCGACAG 9145657 29 100.0 32 ............................. CGTCCGAACAGCCCGATTTCACGGTGCCGCTG 9145596 29 100.0 32 ............................. GTCGATGACTTCGCGGCAGAGACGAGGCGCGC 9145535 29 100.0 32 ............................. CCGACCGGCGTGCTCGACACGGCTCCCGTGTT 9145474 29 96.6 32 ............A................ ACCTCAGACCGGGTGGTGGAGGCAGAGTGGGA 9145413 29 100.0 32 ............................. GCCTCGGCGCTGCCTCGGTGACCTTCCGCTGG 9145352 29 100.0 32 ............................. GATCTCCAGCAGGTTCTACGCATCGACTCGGA 9145291 29 100.0 32 ............................. GAGCACCACGATGACCACGCCGCCCCCACCGC 9145230 29 100.0 32 ............................. TCACCCGACCCTGGATCACCGTAATTCCCTTC 9145169 29 100.0 32 ............................. GGACCTCGAATGACGAAACCAGCCGTTCCCAG 9145108 29 100.0 32 ............................. TCGGCGTCGCCCTGCACGCGGTCCTGGTTGCC 9145047 29 100.0 32 ............................. TCGAGATCAGCGACGACGTCGAACTCGTACTC 9144986 29 100.0 32 ............................. GTGTCCAGAGAAGGCCGAATCACCCCCGTCCT 9144925 29 100.0 32 ............................. CGAGTCCTGCGCGAGACGGCGCGCTGCGATCT 9144864 29 100.0 32 ............................. TCGGTGCTCTCGGGGTTGCCGCGATCACGGAT 9144803 29 100.0 32 ............................. GTCTCGTCCACACCGGACGTGGTGAAGGACTG 9144742 29 100.0 32 ............................. TTGTCGGTTGAGCCGTCGGCGAACCCGCCCGG 9144681 29 100.0 32 ............................. AGTACGCCGCGCGGGGCATCCTGCCCGTCTGC 9144620 29 100.0 32 ............................. GCGTCGGCGCGCCGGGCGGGGTCGGACACGAA 9144559 29 100.0 32 ............................. TAGGTCTGATTGGGGAACGGGTGCCCGACGAC 9144498 29 100.0 15 ............................. TAGGTGCCCGACGAC Deletion [9144455] 9144454 29 100.0 32 ............................. CCGTGGGATGTGATCGTGGCGTGGAAGCTGGA 9144393 29 100.0 32 ............................. CACAAGGGTGGAGACCTAGGCATCCCGAAGAT 9144332 29 100.0 32 ............................. GCCTTGCCCTGCTCAAGCGGAAGTGGCCCGAG 9144271 29 100.0 32 ............................. GTTTCGGCTGGTCAAGCCTAGTTTGCGGGTTT 9144210 29 96.6 32 ...T......................... TCCATGCCGCACACCGCGGCCGCGGTGGTGAT 9144149 29 100.0 32 ............................. TCGAGCCACGCGCGGCCGGACACGAGCAGCCC 9144088 29 100.0 32 ............................. CCGCCTATCGCCTGGGCGTTGCTGCCGATGTC 9144027 29 96.6 32 A............................ GCGCTGGAGCGCCGCTTGTCGTGCTGTGAGCG 9143966 29 96.6 32 ............A................ CAGCTGTCCGCCGCCGAGTACCGCGACCTCGT 9143905 29 100.0 31 ............................. CAGTGGGTCAACGAACGGTGGGACGACGGCG 9143845 29 100.0 32 ............................. GCGACGATTCCGCCGAAGCCGACCCGCTCGGC 9143784 29 100.0 32 ............................. TCCGGCGTGGCGCCGTCCGCGCCGCGGCACTG 9143723 29 96.6 32 A............................ TGAAGCCGGTCGCTCCCGAAGTCCTCGCCGAC 9143662 29 96.6 32 ............................C GTGAGTTCGGAATCAGCCACTTCGTGAGGTGA 9143601 29 93.1 0 ...T......T.................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.3 32 GTGCTCCCCGCGGACGCGGGGATGATCCG # Left flank : CGTACGGAGATGCGCAGTGACTGTCATCGTTCTCACGGCCGTGCCGCCAGGGCTCCGCGGGCACCTCACCCGGTGGCTTCTCGAGATCAGTCCGGGCGTCTACGTCGGCTTCGTGTCAGCCCGAGTGCGAGAGCTGATGTGGGACAGGATCGTCGAACACGTGGCCGAAGGACGTGCACTCATGGTGCACGCGACACAAGGCGAGCAGCGTCTCGAGTTCCAGGTGCACGGACACGACTGGACACCTGTCGACTACGACGGTATCACTCTGATGCGCCGACAAACTGCACCCAGCTACGTGCCAGCCAACACAGGCAAACGCAACCAAATGTCGAAACGAGGAACACCTGCCGAGGGGGCGTTGACCCGAGACGAGGAAGTCTGGAAACGGCGCAATGCGCGCCGCAAGTTCCGTAGAAAGGACCGAGACGGACCAGCCCCACGCGGCGAAACTGAAGCAAAACAACCCCCACACGACGCATAACCGCAGCTCACCAAGT # Right flank : TCGGCGAAGGAGCGGAACGTGCCGCATCGCCGAGGGCGGCCCCCAGCGAGGTCCGGGATTCTCGCCGGCCTTCTTGGTGCCGAGGACTTCACGTACTGGCCGGTCGAGCCCGGCGTGGTGGTCGAAGCACGCGCGGACCGTGCCTTTGAGCTGGGCCGCTACCGGCATCGAGTGTCCGTCGTGCGCGCGAAGCCGGATCAGTAGTTCCGGCTCCACAAAGTTGATCAATGACGGTCATGATGACTGCGAAACCATGTCTGCACCATCCACGCGAGGCAGCGGAGACAACAGCAGGGTCAGGCTGACCAGCAGCGGGCGCCGGAGATGGCGTTGACCAGCGCTTTTGCAAGGTGGTGTTCGAAATTGCGCCCGCGCTGCGGCTACGGAAGCTTGGCCGGCAATGGGCCGATCTCTGCGTGGAGCAGCCCTCTGTGTTCAGAGTTTCCATACCTGTTCAAGGCGGCCCCTGCGGGGCCGCGCCGCTTTCGGCCGGCACGCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //